Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA14_RS02620 Genome accession   NZ_CP106742
Coordinates   583168..583893 (-) Length   241 a.a.
NCBI ID   WP_012613519.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578168..588893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA14_RS02595 (PALA14_00516) - 578640..579155 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA14_RS02600 (PALA14_00517) rarD 579845..580741 (-) 897 WP_023464255.1 EamA family transporter RarD -
  PALA14_RS02605 (PALA14_00518) - 580944..581918 (-) 975 WP_003103303.1 serine/threonine protein kinase -
  PALA14_RS02610 (PALA14_00519) - 581980..582738 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA14_RS02615 (PALA14_00520) - 582806..583126 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  PALA14_RS02620 (PALA14_00521) comF 583168..583893 (-) 726 WP_012613519.1 ComF family protein Machinery gene
  PALA14_RS02625 (PALA14_00522) - 584032..584325 (-) 294 WP_003084806.1 hypothetical protein -
  PALA14_RS02630 (PALA14_00523) - 584379..585305 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PALA14_RS02635 (PALA14_00524) - 585423..586181 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PALA14_RS02640 (PALA14_00525) - 586258..586506 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA14_RS02645 (PALA14_00526) - 586517..587893 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA14_RS02650 (PALA14_00527) - 587895..588773 (+) 879 WP_023464256.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27080.53 Da        Isoelectric Point: 10.8076

>NTDB_id=635899 PALA14_RS02620 WP_012613519.1 583168..583893(-) (comF) [Pseudomonas aeruginosa strain PALA14]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=635899 PALA14_RS02620 WP_012613519.1 583168..583893(-) (comF) [Pseudomonas aeruginosa strain PALA14]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386