Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA13_RS29345 Genome accession   NZ_CP106682
Coordinates   6284097..6284621 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6279097..6289621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA13_RS29330 (PALA13_05821) aroB 6280213..6281319 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PALA13_RS29335 (PALA13_05822) aroK 6281369..6281887 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA13_RS29340 (PALA13_05823) pilQ 6281899..6284043 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  PALA13_RS29345 (PALA13_05824) comL/pilP 6284097..6284621 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA13_RS29350 (PALA13_05825) pilO 6284618..6285241 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA13_RS29355 (PALA13_05826) pilN 6285238..6285834 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA13_RS29360 (PALA13_05827) pilM 6285834..6286898 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA13_RS29365 (PALA13_05828) - 6287083..6289554 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=635867 PALA13_RS29345 WP_003095836.1 6284097..6284621(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA13]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=635867 PALA13_RS29345 WP_003095836.1 6284097..6284621(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA13]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362