Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PALA12_RS28780 Genome accession   NZ_CP106681
Coordinates   6216924..6217520 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PALA12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6211924..6222520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA12_RS28770 (PALA12_05699) - 6213204..6215675 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PALA12_RS28775 (PALA12_05700) pilM 6215860..6216924 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA12_RS28780 (PALA12_05701) pilN 6216924..6217520 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA12_RS28785 (PALA12_05702) pilO 6217517..6218140 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA12_RS28790 (PALA12_05703) comL/pilP 6218137..6218661 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA12_RS28795 (PALA12_05704) pilQ 6218715..6220859 (+) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  PALA12_RS28800 (PALA12_05705) aroK 6220871..6221389 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=635774 PALA12_RS28780 WP_003095839.1 6216924..6217520(+) (pilN) [Pseudomonas aeruginosa strain PALA12]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=635774 PALA12_RS28780 WP_003095839.1 6216924..6217520(+) (pilN) [Pseudomonas aeruginosa strain PALA12]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369