Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LTQ02_RS14375 Genome accession   NZ_CP089205
Coordinates   3164442..3165155 (-) Length   237 a.a.
NCBI ID   WP_231903311.1    Uniprot ID   -
Organism   Vibrio splendidus strain 4_C08b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3159442..3170155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS14360 (LTQ02_14360) cysQ 3162018..3162846 (-) 829 Protein_2742 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LTQ02_RS14365 (LTQ02_14365) nudE 3162883..3163434 (-) 552 WP_017079321.1 ADP compounds hydrolase NudE -
  LTQ02_RS14370 (LTQ02_14370) nfuA 3163748..3164332 (-) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  LTQ02_RS14375 (LTQ02_14375) comF 3164442..3165155 (-) 714 WP_231903311.1 ComF family protein Machinery gene
  LTQ02_RS14380 (LTQ02_14380) bioH 3165249..3166026 (+) 778 Protein_2746 pimeloyl-ACP methyl ester esterase BioH -
  LTQ02_RS14385 (LTQ02_14385) - 3166201..3166674 (+) 474 WP_004735616.1 hypothetical protein -
  LTQ02_RS14390 (LTQ02_14390) - 3166830..3169160 (-) 2331 WP_243579583.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27270.58 Da        Isoelectric Point: 8.9198

>NTDB_id=635767 LTQ02_RS14375 WP_231903311.1 3164442..3165155(-) (comF) [Vibrio splendidus strain 4_C08b]
MLSDWLQKHTPRLVTPQCHLCKLDKSHCDAHPRWCDSCLNLFESVPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=635767 LTQ02_RS14375 WP_231903311.1 3164442..3165155(-) (comF) [Vibrio splendidus strain 4_C08b]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAGTCGCA
CTGCGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAGTAGAGCAGTGCGGACAGTGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAT
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACTGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTAACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

50.41

100

0.519