Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LTQ54_RS08050 Genome accession   NZ_CP089203
Coordinates   1766283..1766996 (+) Length   237 a.a.
NCBI ID   WP_231903311.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761283..1771996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS08035 (LTQ54_08035) - 1762279..1764609 (+) 2331 WP_243579583.1 Tex family protein -
  LTQ54_RS08040 (LTQ54_08040) - 1764765..1765238 (-) 474 WP_004735616.1 hypothetical protein -
  LTQ54_RS08045 (LTQ54_08045) bioH 1765413..1766189 (-) 777 WP_243579584.1 pimeloyl-ACP methyl ester esterase BioH -
  LTQ54_RS08050 (LTQ54_08050) comF 1766283..1766996 (+) 714 WP_231903311.1 ComF family protein Machinery gene
  LTQ54_RS08055 (LTQ54_08055) nfuA 1767106..1767690 (+) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  LTQ54_RS08060 (LTQ54_08060) nudE 1768004..1768555 (+) 552 WP_017079321.1 ADP compounds hydrolase NudE -
  LTQ54_RS08065 (LTQ54_08065) cysQ 1768592..1769419 (+) 828 WP_243579585.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27270.58 Da        Isoelectric Point: 8.9198

>NTDB_id=635694 LTQ54_RS08050 WP_231903311.1 1766283..1766996(+) (comF) [Vibrio splendidus strain 2_C04b]
MLSDWLQKHTPRLVTPQCHLCKLDKSHCDAHPRWCDSCLNLFESVPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=635694 LTQ54_RS08050 WP_231903311.1 1766283..1766996(+) (comF) [Vibrio splendidus strain 2_C04b]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAGTCGCA
CTGCGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAGTAGAGCAGTGCGGACAGTGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAT
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACTGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTAACTAAATCCGCACGATTACACAATCTAAAGAGTGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

50.41

100

0.519