Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LTQ03_RS06875 Genome accession   NZ_CP089201
Coordinates   1527757..1529280 (-) Length   507 a.a.
NCBI ID   WP_004735753.1    Uniprot ID   A0A7W4CAC5
Organism   Vibrio splendidus strain 1_C04a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1522757..1534280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS06850 (LTQ03_06850) - 1522797..1523060 (+) 264 WP_004735759.1 YihD family protein -
  LTQ03_RS06855 (LTQ03_06855) ccoG 1523387..1524805 (+) 1419 WP_017109665.1 cytochrome c oxidase accessory protein CcoG -
  LTQ03_RS06860 (LTQ03_06860) - 1524880..1525866 (+) 987 WP_243584249.1 serine/threonine protein kinase -
  LTQ03_RS06865 (LTQ03_06865) - 1525922..1526521 (+) 600 WP_243584191.1 thiol:disulfide interchange protein DsbA/DsbL -
  LTQ03_RS06870 (LTQ03_06870) - 1526662..1527615 (+) 954 WP_061025218.1 DUF2860 domain-containing protein -
  LTQ03_RS06875 (LTQ03_06875) comM 1527757..1529280 (-) 1524 WP_004735753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LTQ03_RS06880 (LTQ03_06880) ilvG 1529753..1531399 (+) 1647 WP_004735752.1 acetolactate synthase 2 catalytic subunit -
  LTQ03_RS06885 (LTQ03_06885) ilvM 1531401..1531685 (+) 285 WP_017077311.1 acetolactate synthase 2 small subunit -
  LTQ03_RS06890 (LTQ03_06890) - 1531698..1532666 (+) 969 WP_102534647.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55592.70 Da        Isoelectric Point: 7.6532

>NTDB_id=635649 LTQ03_RS06875 WP_004735753.1 1527757..1529280(-) (comM) [Vibrio splendidus strain 1_C04a]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=635649 LTQ03_RS06875 WP_004735753.1 1527757..1529280(-) (comM) [Vibrio splendidus strain 1_C04a]
ATGGGACTCGCGATAATTCACAGCCGGGCTAGTGTGGGAGTAGAGGCACCAGAAGTGACTGTTGAAGTGCATATAAGCAA
CGGTATGCCTGGGTTTACATTGGTGGGGCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTCAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCGAAAAGGATCACGGTCAACCTCGCGCCTGCTGATTTACCTAAGGAGGGAGGACGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAGTTGCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAGC
GATGCTTAGTGGTTCCACATCACAATGGTGATCAGGCGGCTTTAGTCGGCAAGGGGGCCCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCGGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCACTGGAGATCGCCGCCGCGGGCAACCATAACC
TGCTTTTTCTCGGCCCGCCCGGAACTGGAAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTACCTGAGATGAGTGAT
GACGAGGCGATGGAAACTGCTTCGGTGGCTTCTTTAACGCAACAAGAGATCAATCAATACAACTGGAAACAACGACCTTT
CCGTTCTCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATTATCTCCCGTGTCGCGGGTAAGACTCGCTTTCCTGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAACCGCTTATCTG
GGCCATTGTTAGATAGATTCGATATGTCATTGGAGATCCCTCTATTGCCTAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTTGAGACCGCACTGCATC
GATTAGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCACTTATCAGAGGCACTTGGCTACCGAGCGATGGATCGCTTGCTGAAACAACTTTCAGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424