Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LTQ03_RS06250 Genome accession   NZ_CP089201
Coordinates   1393128..1393841 (+) Length   237 a.a.
NCBI ID   WP_243584161.1    Uniprot ID   -
Organism   Vibrio splendidus strain 1_C04a     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388128..1398841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS06235 (LTQ03_06235) - 1390030..1391223 (-) 1194 WP_243583245.1 ISL3 family transposase -
  LTQ03_RS06240 (LTQ03_06240) - 1391445..1391918 (-) 474 WP_004735616.1 hypothetical protein -
  LTQ03_RS06245 (LTQ03_06245) bioH 1392258..1393034 (-) 777 WP_243584160.1 pimeloyl-ACP methyl ester esterase BioH -
  LTQ03_RS06250 (LTQ03_06250) comF 1393128..1393841 (+) 714 WP_243584161.1 ComF family protein Machinery gene
  LTQ03_RS06255 (LTQ03_06255) nfuA 1393951..1394535 (+) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  LTQ03_RS06260 (LTQ03_06260) nudE 1394849..1395400 (+) 552 WP_017079321.1 ADP compounds hydrolase NudE -
  LTQ03_RS06265 (LTQ03_06265) cysQ 1395437..1396264 (+) 828 WP_004735610.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LTQ03_RS06270 (LTQ03_06270) - 1396421..1397200 (-) 780 WP_243584162.1 type II secretion system protein N -
  LTQ03_RS06275 (LTQ03_06275) - 1397202..1397690 (-) 489 WP_017081685.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27305.61 Da        Isoelectric Point: 9.0238

>NTDB_id=635647 LTQ03_RS06250 WP_243584161.1 1393128..1393841(+) (comF) [Vibrio splendidus strain 1_C04a]
MLSDWLQKHTPRLVTPQCHLCKLDKSHNDAHPRWCDSCLNLFEPVPRCQRCGLKTLLTIEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=635647 LTQ03_RS06250 WP_243584161.1 1393128..1393841(+) (comF) [Vibrio splendidus strain 1_C04a]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCATCTGTGCAAGCTAGATAAGTCGCA
CAATGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTCGAGCCAGTGCCGCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAATAGAGCAGTGCGGACAGTGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAC
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTAGCTTCACGTATCGAGCACCCTGCTCCTCTGATCACCAGCGTGCCGCTGCATTGGCGTCGATATATTCATCGAGGCT
TTAATCAAAGTCAGCTGCTCGCTAATTACACAGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGTGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

50.82

100

0.523