Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LRO88_RS09225 Genome accession   NZ_CP089148
Coordinates   1743999..1744778 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain NIB353     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738999..1749778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS09205 trmFO 1739692..1740999 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LRO88_RS09210 xerC 1741067..1741981 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  LRO88_RS09215 clpQ 1741994..1742539 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  LRO88_RS09220 hslU 1742556..1743959 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  LRO88_RS09225 codY 1743999..1744778 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LRO88_RS09230 flgB 1745158..1745547 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  LRO88_RS09235 flgC 1745547..1745999 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  LRO88_RS09240 fliE 1746010..1746330 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  LRO88_RS09245 fliF 1746376..1747986 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  LRO88_RS09250 fliG 1747999..1749015 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  LRO88_RS09255 fliH 1749008..1749760 (+) 753 WP_185157875.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=635297 LRO88_RS09225 WP_003220850.1 1743999..1744778(+) (codY) [Bacillus subtilis strain NIB353]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=635297 LRO88_RS09225 WP_003220850.1 1743999..1744778(+) (codY) [Bacillus subtilis strain NIB353]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467