Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   N8E86_RS02610 Genome accession   NZ_CP104914
Coordinates   527448..527753 (-) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 522448..532753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS02595 (N8E86_02595) araD 522453..523148 (+) 696 WP_264256495.1 L-ribulose-5-phosphate 4-epimerase -
  N8E86_RS02600 (N8E86_02600) - 523176..523994 (+) 819 WP_264256496.1 pyridoxal phosphatase -
  N8E86_RS02605 (N8E86_02605) recC 524032..527436 (-) 3405 WP_264256497.1 exodeoxyribonuclease V subunit gamma -
  N8E86_RS02610 (N8E86_02610) comQ 527448..527753 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  N8E86_RS02615 (N8E86_02615) - 527734..528399 (-) 666 WP_264256498.1 DUF2572 family protein -
  N8E86_RS02620 (N8E86_02620) comO 528401..529120 (-) 720 WP_264256499.1 hypothetical protein Machinery gene
  N8E86_RS02625 (N8E86_02625) comN 529121..529642 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N8E86_RS02645 (N8E86_02645) pal 530282..530734 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  N8E86_RS02650 (N8E86_02650) tolB 530745..532034 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=635111 N8E86_RS02610 WP_017806953.1 527448..527753(-) (comQ) [Avibacterium paragallinarum strain AG21-0333]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=635111 N8E86_RS02610 WP_017806953.1 527448..527753(-) (comQ) [Avibacterium paragallinarum strain AG21-0333]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396