Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CSB63_RS01060 Genome accession   NZ_CP089060
Coordinates   178788..179726 (+) Length   312 a.a.
NCBI ID   WP_134973050.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 173788..184726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS01040 (CSB63_0165) - 175385..176464 (+) 1080 Protein_153 peptide ABC transporter substrate-binding protein -
  CSB63_RS01045 (CSB63_0166) - 176466..176684 (+) 219 Protein_154 ABC transporter permease subunit -
  CSB63_RS01050 - 176695..177730 (+) 1036 Protein_155 ABC transporter permease -
  CSB63_RS01055 - 177744..178786 (+) 1043 Protein_156 ABC transporter ATP-binding protein -
  CSB63_RS01060 (CSB63_0173) amiF 178788..179726 (+) 939 WP_134973050.1 ABC transporter ATP-binding protein Regulator
  CSB63_RS01065 (CSB63_0174) - 179948..180202 (+) 255 WP_223899614.1 hypothetical protein -
  CSB63_RS01070 (CSB63_0175) hslO 180283..181149 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  CSB63_RS01075 (CSB63_0176) dusB 181142..182119 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  CSB63_RS01080 (CSB63_0177) - 182322..183185 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35078.58 Da        Isoelectric Point: 6.2740

>NTDB_id=634844 CSB63_RS01060 WP_134973050.1 178788..179726(+) (amiF) [Streptococcus thermophilus strain CH8]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGEPGSGKTTIGRSVLKLSDIDSGTVTFSGNGISSL
KGKDLHDFRKTDQMIFQDSQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRSPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSIVKYISDRIGAMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIHDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=634844 CSB63_RS01060 WP_134973050.1 178788..179726(+) (amiF) [Streptococcus thermophilus strain CH8]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAACCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGGGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATTCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGAAGTCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATTGTTAAATATATATCCGATCGTATTGGTGCAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTCACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

51.803

97.756

0.506
  amiF Streptococcus thermophilus LMG 18311

51.475

97.756

0.503
  amiF Streptococcus salivarius strain HSISS4

51.148

97.756

0.5