Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LSO60_RS02225 Genome accession   NZ_CP089051
Coordinates   464011..464445 (+) Length   144 a.a.
NCBI ID   WP_263512804.1    Uniprot ID   A0AA46NR49
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459011..469445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS02215 (LSO60_02215) - 459496..463407 (+) 3912 WP_263512802.1 hypothetical protein -
  LSO60_RS02220 (LSO60_02220) - 463409..464017 (+) 609 WP_263512803.1 type IV pilin protein -
  LSO60_RS02225 (LSO60_02225) pilE 464011..464445 (+) 435 WP_263512804.1 type IV pilin protein Machinery gene
  LSO60_RS02230 (LSO60_02230) rpsP 464593..464850 (+) 258 WP_004923845.1 30S ribosomal protein S16 -
  LSO60_RS02235 (LSO60_02235) rimM 464868..465416 (+) 549 WP_263512805.1 ribosome maturation factor RimM -
  LSO60_RS02240 (LSO60_02240) trmD 465470..466213 (+) 744 WP_004985147.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LSO60_RS02245 (LSO60_02245) rplS 466361..466732 (+) 372 WP_004985149.1 50S ribosomal protein L19 -
  LSO60_RS02250 (LSO60_02250) - 466792..467754 (-) 963 WP_004985154.1 triacylglycerol lipase -
  LSO60_RS02255 (LSO60_02255) - 467847..468887 (-) 1041 WP_263512806.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15540.79 Da        Isoelectric Point: 8.8939

>NTDB_id=634805 LSO60_RS02225 WP_263512804.1 464011..464445(+) (pilE) [Acinetobacter ursingii strain RIVM_C010559]
MVNKGFTLIEVMIVVVIIAILAAIAYPSYTQYRVRTNRADVQKELLSIAQQMSAYKVATGTYAGTNVNTIYGSTVYPQGS
AAIYDLTFDPVTTTASEWVLIAKPKSGTIQAGNGWICLNDQGQKYWAKGATACALSATSTWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=634805 LSO60_RS02225 WP_263512804.1 464011..464445(+) (pilE) [Acinetobacter ursingii strain RIVM_C010559]
ATGGTAAACAAAGGATTTACCTTAATAGAGGTCATGATCGTTGTAGTGATTATTGCAATATTAGCTGCAATAGCTTATCC
CTCTTATACTCAGTATAGAGTCCGTACGAATCGAGCTGATGTTCAAAAAGAATTGTTGAGTATTGCTCAACAAATGTCAG
CTTATAAAGTTGCTACTGGTACGTATGCTGGAACAAATGTAAATACTATATACGGTTCAACGGTTTATCCTCAAGGATCA
GCAGCAATTTACGATTTAACATTTGATCCTGTAACTACCACTGCATCTGAATGGGTACTCATTGCCAAACCCAAAAGTGG
AACAATTCAGGCTGGAAATGGCTGGATCTGTCTCAATGATCAAGGTCAGAAATATTGGGCTAAAGGCGCAACGGCTTGCG
CTTTATCAGCCACCTCGACTTGGGACGGACGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

54.61

97.917

0.535
  comF Acinetobacter baylyi ADP1

53.147

99.306

0.528