Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSO59_RS02020 Genome accession   NZ_CP089038
Coordinates   425770..426204 (+) Length   144 a.a.
NCBI ID   WP_004985143.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420770..431204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS02010 (LSO59_02005) - 421243..425166 (+) 3924 WP_228155120.1 PilC/PilY family type IV pilus protein -
  LSO59_RS02015 (LSO59_02010) - 425168..425776 (+) 609 WP_104795028.1 type IV pilin protein -
  LSO59_RS02020 (LSO59_02015) comF 425770..426204 (+) 435 WP_004985143.1 type IV pilin protein Machinery gene
  LSO59_RS02025 (LSO59_02020) rpsP 426354..426611 (+) 258 WP_004923845.1 30S ribosomal protein S16 -
  LSO59_RS02030 (LSO59_02025) rimM 426626..427174 (+) 549 WP_004985145.1 ribosome maturation factor RimM -
  LSO59_RS02035 (LSO59_02030) trmD 427228..427971 (+) 744 WP_004985147.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LSO59_RS02040 (LSO59_02035) rplS 428119..428490 (+) 372 WP_004985149.1 50S ribosomal protein L19 -
  LSO59_RS02045 (LSO59_02040) - 428550..429512 (-) 963 WP_004985154.1 esterase/lipase family protein -
  LSO59_RS02050 (LSO59_02045) - 429605..430645 (-) 1041 WP_004985156.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15797.09 Da        Isoelectric Point: 8.4123

>NTDB_id=634725 LSO59_RS02020 WP_004985143.1 425770..426204(+) (comF) [Acinetobacter ursingii strain RIVM_C011601]
MVNKGFTLIEVMIVVVIIAILVAIAYPSYTQYRIRTNRSDVQKELLNIAQQMSAYKVAIGTYAGTNVNTIYGSTVYPQES
TAIYDLTFDPVTTTASEWVLIAKPKSATIQAGNGWICLNDQGQKYWTKGATACALSATSNWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=634725 LSO59_RS02020 WP_004985143.1 425770..426204(+) (comF) [Acinetobacter ursingii strain RIVM_C011601]
ATGGTAAATAAAGGATTTACCCTAATAGAGGTCATGATCGTTGTAGTGATTATTGCAATATTAGTTGCGATAGCTTATCC
CTCTTATACTCAGTATAGAATCCGTACGAATCGATCAGATGTGCAGAAAGAGTTATTGAATATCGCGCAACAAATGTCTG
CTTATAAAGTTGCTATAGGCACTTATGCCGGAACAAATGTAAATACTATATACGGTTCAACTGTTTACCCTCAAGAATCG
ACAGCAATTTACGATTTGACATTTGACCCAGTAACTACTACTGCGTCTGAATGGGTACTTATTGCCAAACCTAAAAGTGC
AACAATCCAAGCTGGGAATGGCTGGATTTGTCTCAATGATCAAGGTCAAAAATATTGGACCAAAGGTGCAACGGCTTGTG
CTCTTTCTGCCACCTCCAACTGGGACGGACGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

53.846

99.306

0.535
  pilE Acinetobacter baumannii D1279779

53.901

97.917

0.528