Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TEL01S_RS01175 Genome accession   NC_022792
Coordinates   251293..252177 (-) Length   294 a.a.
NCBI ID   WP_028843511.1    Uniprot ID   -
Organism   Pseudothermotoga elfii DSM 9442 = NBRC 107921     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 246293..257177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEL01S_RS01160 - 247903..248892 (-) 990 WP_028843513.1 P1 family peptidase -
  TEL01S_RS01165 - 248945..249376 (+) 432 WP_012002294.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  TEL01S_RS01170 - 249373..251292 (+) 1920 WP_028843512.1 transglycosylase domain-containing protein -
  TEL01S_RS01175 pilA 251293..252177 (-) 885 WP_028843511.1 signal recognition particle-docking protein FtsY Machinery gene
  TEL01S_RS01180 - 252180..253907 (-) 1728 WP_012002297.1 proline--tRNA ligase -
  TEL01S_RS10805 - 253992..256013 (+) 2022 WP_070104236.1 HD domain-containing phosphohydrolase -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 31928.89 Da        Isoelectric Point: 6.0651

>NTDB_id=63469 TEL01S_RS01175 WP_028843511.1 251293..252177(-) (pilA) [Pseudothermotoga elfii DSM 9442 = NBRC 107921]
MGFFERLKTGLSRARKALFEGLSQILKGSKISDEILEELEERLLMADVGYPTTEYIIEQLKQSKTNDALETLKEIMIDLL
SFDSKLNSPDQPPFVITVVGVNGTGKTTTVAKLAAYFQSTGKTVVLGAADTFRAAAIEQLREWGERTGSTVIYHSEGADS
AAVAFDAVSHAKAREKDVVIIDTAGRLHTKKNLMEELKKVHRVIGKVVPGAPHEVLLVIDATTGQNGLVQAKVFKEMVDV
TGIVITKLDGTAKGGISLAIKKELNLPIKFIGIGEGAEDLKPFDAKEFVEALIY

Nucleotide


Download         Length: 885 bp        

>NTDB_id=63469 TEL01S_RS01175 WP_028843511.1 251293..252177(-) (pilA) [Pseudothermotoga elfii DSM 9442 = NBRC 107921]
ATGGGATTTTTCGAACGACTTAAAACAGGACTTTCCAGAGCAAGAAAAGCGCTGTTTGAAGGACTTTCACAAATTCTTAA
AGGTAGCAAAATAAGCGATGAAATTCTCGAAGAGCTTGAAGAAAGATTGCTGATGGCAGATGTCGGTTATCCAACAACAG
AATACATAATAGAGCAATTGAAACAGAGCAAAACCAATGATGCACTCGAAACTTTAAAAGAAATAATGATTGATCTGCTT
TCTTTCGATAGCAAGCTTAATTCACCAGATCAACCTCCCTTTGTGATAACAGTTGTTGGAGTTAATGGAACAGGTAAAAC
CACAACTGTAGCAAAACTCGCTGCGTATTTTCAATCAACTGGGAAAACAGTTGTATTGGGTGCAGCAGATACCTTCAGGG
CAGCAGCAATAGAACAATTAAGAGAATGGGGAGAAAGAACTGGCTCTACGGTTATTTATCATTCCGAAGGAGCTGATTCT
GCCGCAGTTGCTTTTGATGCTGTAAGCCATGCGAAGGCTCGAGAAAAAGATGTGGTGATAATCGATACAGCAGGAAGGTT
GCATACGAAAAAGAACCTTATGGAAGAACTGAAAAAAGTTCACAGAGTTATCGGTAAAGTTGTCCCGGGAGCACCTCACG
AGGTTTTGCTGGTCATAGATGCTACCACTGGGCAAAACGGATTGGTTCAAGCAAAGGTTTTCAAGGAAATGGTAGATGTA
ACTGGGATCGTTATAACAAAGCTTGATGGCACAGCAAAAGGCGGTATATCTTTAGCAATCAAAAAAGAATTAAATTTACC
TATCAAATTCATAGGAATAGGGGAAGGTGCCGAAGATCTTAAGCCATTCGACGCAAAAGAGTTTGTAGAAGCTTTAATTT
ATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(93-293)

SRP54-type protein, helical bundle domain (SRP54_N)

(18-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.675

100

0.5

Multiple sequence alignment