Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   N8A75_RS08080 Genome accession   NZ_CP104878
Coordinates   1541479..1541928 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain 4ZT     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536479..1546928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS08040 (N8A75_08040) ctaE 1536496..1537119 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  N8A75_RS08045 (N8A75_08045) ctaF 1537122..1537454 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  N8A75_RS08050 (N8A75_08050) ctaG 1537482..1538375 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  N8A75_RS08055 (N8A75_08055) ylbA 1538407..1538769 (-) 363 WP_003232238.1 YugN family protein -
  N8A75_RS08060 (N8A75_08060) ylbB 1538909..1539355 (+) 447 WP_046160383.1 CBS domain-containing protein -
  N8A75_RS08065 (N8A75_08065) ylbC 1539439..1540479 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  N8A75_RS08070 (N8A75_08070) ylbD 1540710..1541108 (+) 399 WP_046160384.1 YlbD family protein -
  N8A75_RS08075 (N8A75_08075) ylbE 1541124..1541363 (+) 240 WP_003232231.1 YlbE-like family protein -
  N8A75_RS08080 (N8A75_08080) ylbF 1541479..1541928 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  N8A75_RS08085 (N8A75_08085) ylbG 1541983..1542255 (+) 273 WP_009967171.1 YlbG family protein -
  N8A75_RS08090 (N8A75_08090) rsmD 1542578..1543132 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N8A75_RS08095 (N8A75_08095) coaD 1543137..1543622 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  N8A75_RS08100 (N8A75_08100) spoVV 1543633..1544859 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  N8A75_RS08105 (N8A75_08105) ylbK 1545040..1545822 (+) 783 WP_003232221.1 patatin family protein -
  N8A75_RS08110 (N8A75_08110) sepM 1545824..1546849 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=634521 N8A75_RS08080 WP_003221370.1 1541479..1541928(+) (ylbF) [Bacillus subtilis strain 4ZT]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=634521 N8A75_RS08080 WP_003221370.1 1541479..1541928(+) (ylbF) [Bacillus subtilis strain 4ZT]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1