Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA9_RS30300 Genome accession   NZ_CP104870
Coordinates   6523924..6524448 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6518924..6529448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA9_RS30285 (PALA9_05996) aroB 6520040..6521146 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PALA9_RS30290 (PALA9_05997) aroK 6521196..6521714 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA9_RS30295 (PALA9_05998) pilQ 6521726..6523870 (-) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  PALA9_RS30300 (PALA9_05999) comL/pilP 6523924..6524448 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA9_RS30305 (PALA9_06000) pilO 6524445..6525068 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA9_RS30310 (PALA9_06001) pilN 6525065..6525661 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA9_RS30315 (PALA9_06002) pilM 6525661..6526725 (-) 1065 WP_269973945.1 type IV pilus assembly protein PilM Machinery gene
  PALA9_RS30320 (PALA9_06003) - 6526910..6529381 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=634441 PALA9_RS30300 WP_003095836.1 6523924..6524448(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA9]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=634441 PALA9_RS30300 WP_003095836.1 6523924..6524448(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA9]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362