Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BTOYO_RS05325 Genome accession   NC_022781
Coordinates   1061584..1062363 (-) Length   259 a.a.
NCBI ID   WP_000421291.1    Uniprot ID   A0A1V6LJD3
Organism   Bacillus toyonensis BCT-7112     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056584..1067363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTOYO_RS05300 (Btoyo_1058) uppS 1057332..1058108 (-) 777 WP_000971308.1 isoprenyl transferase -
  BTOYO_RS05305 (Btoyo_1059) frr 1058194..1058751 (-) 558 WP_000531505.1 ribosome recycling factor -
  BTOYO_RS05310 (Btoyo_1060) pyrH 1058754..1059476 (-) 723 WP_000042662.1 UMP kinase -
  BTOYO_RS05315 (Btoyo_1061) tsf 1059543..1060430 (-) 888 WP_001018579.1 translation elongation factor Ts -
  BTOYO_RS05320 (Btoyo_1062) rpsB 1060534..1061235 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  BTOYO_RS05325 (Btoyo_1063) codY 1061584..1062363 (-) 780 WP_000421291.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BTOYO_RS05330 hslU 1062441..1063831 (-) 1391 Protein_1067 ATP-dependent protease ATPase subunit HslU -
  BTOYO_RS05335 (Btoyo_1066) hslV 1063854..1064396 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  BTOYO_RS05340 xerC 1064439..1065337 (-) 899 Protein_1069 tyrosine recombinase XerC -
  BTOYO_RS05345 (Btoyo_1069) trmFO 1065403..1066707 (-) 1305 WP_000212000.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28788.03 Da        Isoelectric Point: 4.7947

>NTDB_id=63425 BTOYO_RS05325 WP_000421291.1 1061584..1062363(-) (codY) [Bacillus toyonensis BCT-7112]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=63425 BTOYO_RS05325 WP_000421291.1 1061584..1062363(-) (codY) [Bacillus toyonensis BCT-7112]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGATACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V6LJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.853

100

0.819
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment