Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA4_RS26330 Genome accession   NZ_CP104866
Coordinates   5639206..5639631 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5634206..5644631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS26315 (PALA4_05199) pilX 5634776..5635363 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA4_RS26320 (PALA4_05200) pilY1 5635375..5638860 (+) 3486 WP_003110421.1 type 4a pilus biogenesis protein PilY1 -
  PALA4_RS26325 (PALA4_05201) pilY2 5638862..5639209 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA4_RS26330 (PALA4_05202) comF 5639206..5639631 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA4_RS26335 (PALA4_05203) ispH 5639678..5640622 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA4_RS26340 (PALA4_05204) fkpB 5640708..5641148 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA4_RS26345 (PALA4_05205) lspA 5641141..5641650 (-) 510 WP_003110420.1 signal peptidase II -
  PALA4_RS26350 (PALA4_05206) ileS 5641643..5644474 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=634025 PALA4_RS26330 WP_003094721.1 5639206..5639631(+) (comF) [Pseudomonas aeruginosa strain PALA4]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=634025 PALA4_RS26330 WP_003094721.1 5639206..5639631(+) (comF) [Pseudomonas aeruginosa strain PALA4]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383