Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LRK53_RS16705 Genome accession   NZ_CP088923
Coordinates   3674898..3675956 (-) Length   352 a.a.
NCBI ID   WP_027492876.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain FW510-R12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669898..3680956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK53_RS16685 (LRK53_16685) - 3670780..3672927 (-) 2148 WP_027492872.1 type IV pilus secretin PilQ -
  LRK53_RS16690 (LRK53_16690) - 3672984..3673526 (-) 543 WP_027492873.1 pilus assembly protein PilP -
  LRK53_RS16695 (LRK53_16695) pilO 3673526..3674179 (-) 654 WP_027492874.1 type 4a pilus biogenesis protein PilO -
  LRK53_RS16700 (LRK53_16700) - 3674176..3674898 (-) 723 WP_027492875.1 PilN domain-containing protein -
  LRK53_RS16705 (LRK53_16705) pilM 3674898..3675956 (-) 1059 WP_027492876.1 pilus assembly protein PilM Machinery gene
  LRK53_RS16710 (LRK53_16710) - 3676230..3678758 (+) 2529 WP_027492877.1 penicillin-binding protein 1A -
  LRK53_RS16715 (LRK53_16715) - 3678817..3679488 (+) 672 WP_027492878.1 hypothetical protein -
  LRK53_RS16720 (LRK53_16720) - 3679560..3680855 (-) 1296 WP_027492879.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37880.39 Da        Isoelectric Point: 4.5116

>NTDB_id=634025 LRK53_RS16705 WP_027492876.1 3674898..3675956(-) (pilM) [Rhodanobacter thiooxydans strain FW510-R12]
MGLFTPKKPALIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEIEAVGDAIRRALARSGSKLKHASAA
VAGSAVITRIIPMTGDLSDDDLEGQIQVEANQYIPYPIDEVSLDYEVLGPVRDNPDMNNVLLAASRTENVDMRVAALDLG
GLTASVIDVEAFAMENAFAMIADQLNVGRDALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRFGLSYEE
AGRAKRKGGLPESYETEALEPFKESLIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGLGQMLEEQLGVPCVVANPLA
RMSLSPRVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=634025 LRK53_RS16705 WP_027492876.1 3674898..3675956(-) (pilM) [Rhodanobacter thiooxydans strain FW510-R12]
GTGGGGCTTTTTACACCGAAGAAGCCGGCGCTGATTGGTGTCGACATCAGTTCGACTGCCGTCAAGCTGCTGCAGCTAAG
TCAGGCGGGCGGCCGTTATCGCGTTGAGCATTACGCGGTCGAGCCGCTGCCGCCGAACGCCGTGGTCGAGAAGAACATCG
TCGAGATCGAGGCGGTGGGCGATGCGATCCGTCGCGCGCTGGCACGCTCGGGCTCCAAGCTCAAGCACGCTTCCGCCGCG
GTGGCCGGGTCGGCGGTGATCACGCGCATCATCCCGATGACCGGCGACCTTTCCGACGACGACCTGGAAGGCCAGATCCA
GGTCGAGGCCAATCAATACATCCCGTACCCGATCGACGAGGTCAGCCTCGACTATGAGGTGCTCGGTCCGGTCCGCGACA
ACCCCGACATGAACAACGTGCTGCTGGCCGCCTCGCGCACCGAGAACGTGGACATGCGCGTGGCTGCGTTGGACCTCGGC
GGACTCACCGCCAGCGTGATCGACGTCGAGGCATTCGCGATGGAGAACGCCTTCGCGATGATTGCCGACCAGCTCAACGT
GGGTCGCGACGCGCTGGTGGCGGTAGTCGACATCGGCGCCACCATGACCACGCTGTCGGTGCTGCGCAACCAGCGCACGA
TCTACTCGCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTTCGGGCTGTCCTACGAGGAG
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGAGTCCTACGAGACCGAGGCGCTGGAGCCGTTCAAGGAATCGCTGAT
CCAGCAGATCAGCCGCTTGCTGCAGTTCTTCTTTGCCGGCAGCGAGTACAGCAAGGTCGACCAGGTGGTGCTGGCCGGCG
GTTGCGCCTCGATCGAGGGGCTTGGCCAGATGCTGGAGGAGCAGCTCGGCGTGCCCTGCGTCGTCGCCAACCCGTTGGCG
CGCATGTCGCTGTCGCCGCGGGTCCAGGCACAGTCGCTGGCGCAGGACGCCCCCGCGTTGATGATCGCGGTCGGCCTCGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.705

100

0.517
  comM Acinetobacter baylyi ADP1

51.429

99.432

0.511
  pilM Legionella pneumophila strain ERS1305867

42.776

100

0.429