Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA4_RS18675 Genome accession   NZ_CP104866
Coordinates   4032478..4033203 (+) Length   241 a.a.
NCBI ID   WP_004365178.1    Uniprot ID   A0A0H2ZL31
Organism   Pseudomonas aeruginosa strain PALA4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4027478..4038203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS18645 (PALA4_03678) - 4027598..4028476 (-) 879 WP_003084817.1 5-oxoprolinase subunit B family protein -
  PALA4_RS18650 (PALA4_03679) - 4028478..4029854 (-) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA4_RS18655 (PALA4_03680) - 4029865..4030113 (-) 249 WP_003111233.1 acetyl-CoA carboxylase -
  PALA4_RS18660 (PALA4_03681) - 4030190..4030948 (-) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PALA4_RS18665 (PALA4_03682) - 4031066..4031992 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  PALA4_RS18670 (PALA4_03683) - 4032046..4032339 (+) 294 WP_003084806.1 hypothetical protein -
  PALA4_RS18675 (PALA4_03684) comF 4032478..4033203 (+) 726 WP_004365178.1 ComF family protein Machinery gene
  PALA4_RS18680 (PALA4_03685) - 4033245..4033565 (+) 321 WP_003111112.1 YfiM family lipoprotein -
  PALA4_RS18685 (PALA4_03686) - 4033633..4034391 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA4_RS18690 (PALA4_03687) - 4034453..4035427 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  PALA4_RS18695 (PALA4_03688) rarD 4035630..4036526 (+) 897 WP_003111111.1 EamA family transporter RarD -
  PALA4_RS18700 (PALA4_03689) - 4037216..4037731 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27019.49 Da        Isoelectric Point: 11.0325

>NTDB_id=633995 PALA4_RS18675 WP_004365178.1 4032478..4033203(+) (comF) [Pseudomonas aeruginosa strain PALA4]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=633995 PALA4_RS18675 WP_004365178.1 4032478..4033203(+) (comF) [Pseudomonas aeruginosa strain PALA4]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATTGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382