Detailed information NTG0633806

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: LRX86_RS10175
• Genome accession: NZ_CP088895
• Coordinates: 2140846..2141547 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594585.1
• Uniprot ID: A0A009Q1Y5
• Organism: Acinetobacter baumannii strain DETAB-R21
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2135846..2146547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRX86_RS10145 (LRX86_10140)	-	2136153..2136596 (-)	444	WP_001246675.1	SRPBCC family protein	-
LRX86_RS10150 (LRX86_10145)	tadA	2136666..2137169 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
LRX86_RS10155 (LRX86_10150)	-	2137176..2138300 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
LRX86_RS10160 (LRX86_10155)	ung	2138297..2139010 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
LRX86_RS10165 (LRX86_10160)	-	2139061..2139657 (-)	597	WP_000908454.1	6-carboxytetrahydropterin synthase	-
LRX86_RS10170 (LRX86_10165)	gspK	2139887..2140846 (-)	960	WP_000301468.1	type II secretion system minor pseudopilin GspK	-
LRX86_RS10175 (LRX86_10170)	xcpW	2140846..2141547 (-)	702	WP_000594585.1	type II secretion system minor pseudopilin GspJ	Machinery gene
LRX86_RS10180 (LRX86_10175)	xcpV	2141547..2141927 (-)	381	WP_254231386.1	type II secretion system minor pseudopilin GspI	Machinery gene
LRX86_RS10185 (LRX86_10180)	-	2141917..2142471 (-)	555	WP_000841373.1	type II secretion system protein	-
LRX86_RS10190 (LRX86_10185)	-	2142481..2143089 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
LRX86_RS10195 (LRX86_10190)	-	2143127..2143900 (-)	774	WP_000497298.1	TatD family hydrolase	-
LRX86_RS10200 (LRX86_10195)	-	2143918..2144259 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
LRX86_RS10205 (LRX86_10200)	-	2144271..2145251 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
LRX86_RS10210 (LRX86_10205)	kdsB	2145263..2146024 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26595.57 Da
• Isoelectric Point: 9.5501

>NTDB_id=633806 LRX86_RS10175 WP_000594585.1 2140846..2141547(-) (xcpW) [Acinetobacter baumannii strain DETAB-R21]
MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=633806 LRX86_RS10175 WP_000594585.1 2140846..2141547(-) (xcpW) [Acinetobacter baumannii strain DETAB-R21]
ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009Q1Y5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	100	100	1