Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LRX85_RS16540 Genome accession   NZ_CP088894
Coordinates   3459150..3459476 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain XH1935     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3454150..3464476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX85_RS16520 (LRX85_16520) - 3454250..3454879 (-) 630 WP_000219970.1 FHA domain-containing protein -
  LRX85_RS16525 (LRX85_16525) gspD 3454920..3457196 (-) 2277 WP_001196427.1 type II secretion system secretin GspD -
  LRX85_RS16530 (LRX85_16530) - 3457238..3458074 (-) 837 WP_000870029.1 type II secretion system protein N -
  LRX85_RS16535 (LRX85_16535) gspN 3458074..3458817 (-) 744 WP_000730343.1 type II secretion system protein N -
  LRX85_RS16540 (LRX85_16540) hns 3459150..3459476 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LRX85_RS16545 (LRX85_16545) - 3459671..3460111 (-) 441 WP_000661569.1 thioesterase family protein -
  LRX85_RS16550 (LRX85_16550) - 3460119..3461312 (-) 1194 WP_000681771.1 hypothetical protein -
  LRX85_RS16555 (LRX85_16555) - 3461322..3462161 (-) 840 WP_001230203.1 hypothetical protein -
  LRX85_RS16560 (LRX85_16560) - 3462170..3462937 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  LRX85_RS16565 (LRX85_16565) hemC 3462942..3463859 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=633775 LRX85_RS16540 WP_000801427.1 3459150..3459476(-) (hns) [Acinetobacter baumannii strain XH1935]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=633775 LRX85_RS16540 WP_000801427.1 3459150..3459476(-) (hns) [Acinetobacter baumannii strain XH1935]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1