Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LRX85_RS01430 Genome accession   NZ_CP088894
Coordinates   299628..300446 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1935     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 294628..305446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX85_RS01395 (LRX85_01395) - 295210..295340 (-) 131 Protein_269 hypothetical protein -
  LRX85_RS01400 (LRX85_01400) rpoZ 295379..295657 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LRX85_RS01405 (LRX85_01405) gmk 295730..296359 (-) 630 WP_000015937.1 guanylate kinase -
  LRX85_RS01410 (LRX85_01410) ispH 296482..297432 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRX85_RS01415 (LRX85_01415) fimU 297602..298075 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LRX85_RS01420 (LRX85_01420) pilV 298069..298629 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LRX85_RS01425 (LRX85_01425) pilW 298630..299631 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LRX85_RS01430 (LRX85_01430) pilX 299628..300446 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LRX85_RS01435 (LRX85_01435) pilY1 300458..304312 (+) 3855 WP_000768956.1 PilC/PilY family type IV pilus protein Machinery gene
  LRX85_RS01440 (LRX85_01440) pilY2 304325..304807 (+) 483 WP_001046415.1 type IV pilin protein Machinery gene
  LRX85_RS01445 (LRX85_01445) pilE 304804..305229 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=633746 LRX85_RS01430 WP_000149374.1 299628..300446(+) (pilX) [Acinetobacter baumannii strain XH1935]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=633746 LRX85_RS01430 WP_000149374.1 299628..300446(+) (pilX) [Acinetobacter baumannii strain XH1935]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993