Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KDJ21_RS12635 Genome accession   NZ_CP088268
Coordinates   2601140..2603524 (+) Length   794 a.a.
NCBI ID   WP_212136770.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596140..2608524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS12610 (KDJ21_012610) - 2596907..2597587 (+) 681 WP_212136776.1 YczE/YyaS/YitT family protein -
  KDJ21_RS12615 (KDJ21_012615) cymR 2597598..2598014 (+) 417 WP_121662937.1 cysteine metabolism transcriptional regulator CymR -
  KDJ21_RS12620 (KDJ21_012620) - 2598060..2599199 (+) 1140 WP_121662936.1 cysteine desulfurase family protein -
  KDJ21_RS12625 (KDJ21_012625) mnmA 2599223..2600334 (+) 1112 Protein_2397 tRNA 2-thiouridine(34) synthase MnmA -
  KDJ21_RS12630 (KDJ21_012630) - 2600455..2601114 (+) 660 WP_212136772.1 tetratricopeptide repeat protein -
  KDJ21_RS12635 (KDJ21_012635) recD2 2601140..2603524 (+) 2385 WP_212136770.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KDJ21_RS12640 (KDJ21_012640) - 2603551..2604027 (+) 477 WP_212136768.1 PRC-barrel domain-containing protein -
  KDJ21_RS12645 (KDJ21_012645) - 2604044..2604235 (+) 192 WP_121665060.1 hypothetical protein -
  KDJ21_RS12650 (KDJ21_012650) - 2604250..2604381 (+) 132 WP_121662931.1 YrzQ family protein -
  KDJ21_RS12655 (KDJ21_012655) - 2604494..2605555 (+) 1062 WP_212136766.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89407.34 Da        Isoelectric Point: 4.9172

>NTDB_id=633634 KDJ21_RS12635 WP_212136770.1 2601140..2603524(+) (recD2) [Metabacillus litoralis strain NCTR108]
MQESADLFGEKERYVKGLVKVVIFHNEQNLYSVLKVRVHETSEDIEDKEITVTGYFPFLHEDDTYTFFGSFTNHPKFGLQ
FQTEHFRKEIPQTKEGIIQYLSSDLFKGIGKKTAEAIVEKLGESAISKILQNPSILDDIPKVNKDKAKQLVDALISHQGL
EQIMIALNQFGFGPQLAMKIYQTYQDETLTIIQENPYQLVQDVEGIGFVRADELGEHLGISGKSAERIKAACHYNVEHLC
LQEGHVYVTTEQLIVKTKELLDHSKKETIHESDIANEIIALGKEGKMIVEENRAYLPSLYFAEQGLVKNINKILDQTEYE
DLFPESEFLLSLGNLEERMNVQYAPTQKDAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGCSLDPKDYKKEETF
PIVLVAPTGRAAKRMSEATGMPAVTIHRLLKWNGADGFEHDEENPIAGKLLIIDEVSMVDIWIANQLFKALPKEIQVIMV
GDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIIELAHDIKEGRLPQNIAAPTSDRSFIRCSQVQMKEVIGK
IIQSALKKGYTARDIQILAPMYRGPAGIDQLNKLLQELFNPKASGKRELKFGDVVYRNGDKVLQLVNQPDSNVFNGDIGE
IVSIFYAKENTEKEDMIVVSFDGNEVTYTKQDFNQFTHAFCCSIHKSQGSEFPIVIMPIVKGYYRMLRRNLIYTAVTRSK
KSLVLCGELDALEWGIKNNESSERQTSLMLKLGADQIKDLELDELQKQLPFPLEDANIGMENLTPYDFMEASEI

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=633634 KDJ21_RS12635 WP_212136770.1 2601140..2603524(+) (recD2) [Metabacillus litoralis strain NCTR108]
ATGCAGGAGAGTGCAGATTTATTTGGAGAAAAAGAGCGCTATGTCAAAGGACTAGTTAAGGTTGTTATCTTTCATAATGA
ACAAAATCTTTATTCAGTGCTAAAAGTAAGAGTACATGAAACGAGTGAAGATATAGAAGATAAAGAAATAACTGTTACTG
GTTACTTTCCCTTCCTGCATGAAGATGATACCTATACTTTTTTTGGGTCGTTTACAAATCATCCTAAGTTTGGACTTCAA
TTTCAAACCGAACATTTTCGAAAGGAAATTCCTCAAACAAAAGAAGGGATCATACAATATCTTTCAAGTGATCTTTTTAA
AGGTATCGGAAAAAAAACAGCGGAAGCAATCGTTGAAAAATTGGGTGAATCCGCTATTTCGAAAATTTTACAAAACCCCT
CCATTTTGGATGATATTCCTAAGGTGAATAAAGATAAAGCAAAACAATTGGTTGATGCGCTAATTTCTCATCAAGGTCTT
GAGCAAATCATGATTGCGCTAAATCAGTTTGGATTTGGTCCACAGCTTGCGATGAAGATCTATCAAACTTACCAAGATGA
AACATTAACCATCATTCAGGAGAATCCTTATCAATTGGTACAGGATGTAGAAGGAATTGGTTTTGTTCGCGCTGATGAGC
TTGGAGAACACCTTGGTATTTCGGGAAAAAGTGCTGAACGTATTAAAGCAGCTTGTCATTACAATGTCGAGCACCTTTGC
CTACAGGAAGGTCATGTTTATGTGACAACTGAGCAGCTAATTGTTAAAACAAAGGAGCTCCTTGATCACTCTAAGAAAGA
AACCATTCACGAGTCTGATATTGCAAATGAGATCATTGCACTAGGTAAAGAGGGGAAAATGATTGTTGAAGAAAACCGTG
CTTACCTTCCATCACTCTATTTTGCTGAACAGGGATTGGTGAAAAATATTAATAAGATCCTTGATCAAACAGAATATGAG
GATTTATTTCCTGAATCTGAATTTTTATTATCTCTGGGGAACCTCGAGGAAAGAATGAATGTGCAGTATGCACCAACACA
AAAAGATGCGATTCAGAAGGCGCTAATGTCACCAATGTTACTACTAACTGGGGGACCTGGTACAGGAAAAACAACCGTTA
TTAAAGGGATTGTAGAATTGTATTCAGATTTACATGGATGTTCTCTTGATCCTAAAGATTATAAAAAGGAAGAAACTTTT
CCAATTGTACTTGTAGCTCCAACAGGGAGAGCAGCAAAACGTATGAGTGAAGCCACAGGAATGCCGGCGGTCACGATTCA
CCGTCTTTTAAAATGGAATGGTGCGGATGGTTTTGAACACGATGAAGAAAACCCGATTGCAGGCAAACTTCTGATCATTG
ATGAGGTCTCAATGGTTGATATATGGATTGCCAACCAATTATTTAAAGCTTTGCCTAAAGAAATTCAGGTTATCATGGTA
GGCGATGAGGATCAGCTTCCTTCAGTTGGTCCTGGTCAAGTGCTTCGTGATTTATTGGCCTCTCAAGTGATACCAACGGT
CCGTCTGACAGATATTTACCGTCAGGCAGAGGGATCTTCTATTATTGAACTTGCCCACGATATAAAGGAAGGTAGACTTC
CACAAAATATTGCGGCACCAACTTCGGACCGTTCGTTTATTAGATGCTCACAAGTTCAGATGAAAGAAGTTATAGGTAAA
ATCATACAAAGTGCACTGAAAAAAGGATATACAGCGAGAGATATACAAATCCTGGCACCAATGTATAGAGGACCTGCTGG
TATTGATCAGCTAAATAAATTACTTCAAGAGCTTTTTAATCCAAAAGCATCTGGTAAAAGAGAATTGAAGTTCGGGGATG
TTGTGTACCGAAATGGTGATAAAGTGCTGCAGCTCGTGAATCAGCCTGATAGCAATGTATTTAATGGAGATATTGGAGAG
ATTGTATCCATTTTTTATGCGAAAGAAAATACCGAAAAAGAAGATATGATCGTAGTTTCATTCGATGGTAATGAAGTAAC
GTATACGAAACAAGATTTTAATCAATTTACGCATGCCTTTTGTTGCTCCATTCATAAATCACAAGGAAGTGAGTTTCCAA
TTGTGATTATGCCTATTGTTAAAGGATACTATCGAATGCTAAGACGAAACTTAATTTATACAGCAGTAACAAGAAGTAAA
AAATCTCTTGTTTTATGTGGGGAGTTAGATGCTTTAGAGTGGGGCATTAAAAATAATGAAAGTTCCGAAAGACAAACAAG
CTTAATGTTAAAGCTTGGAGCGGATCAAATAAAAGATCTAGAACTTGATGAATTACAAAAACAATTGCCATTCCCTCTTG
AGGATGCAAATATTGGCATGGAAAACCTTACACCGTATGACTTTATGGAAGCTAGCGAAATATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

70.403

100

0.704