Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   KDJ21_RS12550 Genome accession   NZ_CP088268
Coordinates   2581932..2584286 (+) Length   784 a.a.
NCBI ID   WP_212136786.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2576932..2589286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS12530 (KDJ21_012530) - 2577777..2578070 (+) 294 WP_121665063.1 post-transcriptional regulator -
  KDJ21_RS12535 (KDJ21_012535) secDF 2578207..2580450 (+) 2244 WP_212136788.1 protein translocase subunit SecDF -
  KDJ21_RS12540 (KDJ21_012540) - 2580589..2581482 (+) 894 WP_121662948.1 cation diffusion facilitator family transporter -
  KDJ21_RS12545 (KDJ21_012545) - 2581501..2581755 (+) 255 WP_232273856.1 LapA family protein -
  KDJ21_RS12550 (KDJ21_012550) recJ 2581932..2584286 (+) 2355 WP_212136786.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  KDJ21_RS12555 (KDJ21_012555) - 2584303..2584815 (+) 513 WP_121662945.1 adenine phosphoribosyltransferase -
  KDJ21_RS12560 (KDJ21_012560) - 2585161..2587368 (+) 2208 WP_121662944.1 RelA/SpoT family protein -
  KDJ21_RS12565 (KDJ21_012565) dtd 2587382..2587822 (+) 441 WP_212136784.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88121.83 Da        Isoelectric Point: 5.0221

>NTDB_id=633633 KDJ21_RS12550 WP_212136786.1 2581932..2584286(+) (recJ) [Metabacillus litoralis strain NCTR108]
MLKAKTRWMVQSSDETLIETLIDNLSITPLVASLLVNRGIHSVEEAREFLETEKQSFHDPFLLKDMDKAVHRIKTAIEQN
EHILVYGDYDADGVSSTTVLLTALRTLGANVDFYIPNRFTEGYGPNEAAFRHAHEKGFSLIITVDTGIAAVHEAQVAKEL
GMDLIITDHHEPGPILPEALAIIHPKQPGCTYPFKELAGVGVAFKLSHALLGDVPTDLLEVAAIGTIADLVALHDENRLI
AKKGINQLKTTKRIGLKALLKIANVKMDEINEDTIGFALGPRINAVGRLQSADPAVDLLLSEDEEEASVIAEEIDLLNKE
RQKLVSTMTEEAIEEVETRFPIEDHPVLVIAREGWNPGVVGIVASRLVDRFYRPTIVLSIDREKGIAKGSARSIVGFDLF
ENLSTCRDILPHFGGHPMAAGMTLNLEDVDSLRERLVEKAKNILTENDFIPVTKVDVSCNLEDISVNSIEEMQLLSPFGM
NNPKPVIQIENVTLANVRKIGSEQNHLKLVFSQEDCQLDCVGFGMGYIHDELSPSVTLSAIGELSINEWNNLRKPQIMLQ
DIKVDEWQLFDFRGTRNVDKLVSSVTTLEESIIVTFEETTHDYVKNLGFEQKAMLVKTKQDALNLSVKNKHVILMDIPSS
LDHFDALFSEGKPARIYTVFQQDSDHFFSTIPTREHFKWYYGFLLKKGSFKLHERGKQLAAHKGWTKETIEFMSQVFFEL
EFVTIENGVISTNSSTRKRDLTESKTYAQKQMRLELEKTLLYTSYMQLKQWFEERFPLDAPVGV

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=633633 KDJ21_RS12550 WP_212136786.1 2581932..2584286(+) (recJ) [Metabacillus litoralis strain NCTR108]
ATGTTAAAGGCAAAAACAAGATGGATGGTTCAATCATCTGATGAAACCTTAATTGAAACACTTATTGATAACTTATCCAT
TACACCGTTAGTCGCATCTTTACTTGTAAATAGAGGCATACATTCAGTAGAAGAAGCACGCGAATTCTTGGAAACTGAAA
AACAATCTTTTCATGATCCGTTTCTTCTAAAAGATATGGACAAGGCTGTCCACCGAATAAAAACGGCGATAGAACAAAAT
GAGCATATATTAGTTTATGGAGATTATGATGCTGATGGAGTAAGCAGTACAACTGTATTATTAACAGCTTTACGTACTCT
GGGTGCAAACGTAGATTTCTATATTCCAAATCGATTTACCGAGGGTTATGGACCAAATGAAGCAGCTTTTAGACATGCAC
ATGAAAAGGGCTTTTCTTTAATCATTACAGTTGATACAGGAATTGCAGCTGTTCATGAAGCACAAGTGGCAAAAGAATTA
GGGATGGATTTGATTATTACAGACCACCATGAGCCAGGTCCGATTCTTCCAGAAGCACTTGCGATTATCCATCCAAAACA
ACCAGGATGTACCTATCCTTTTAAGGAGCTTGCTGGAGTTGGCGTTGCCTTTAAATTAAGTCATGCTCTGCTTGGTGATG
TTCCAACTGATTTATTAGAAGTAGCAGCAATAGGAACAATCGCAGATTTAGTAGCACTTCATGATGAAAATAGATTAATA
GCTAAAAAAGGTATAAACCAGTTAAAAACAACAAAACGTATTGGACTAAAAGCGTTATTAAAAATTGCCAATGTCAAGAT
GGATGAAATAAATGAGGATACGATAGGTTTTGCACTGGGGCCACGAATTAATGCAGTTGGTCGTTTACAATCAGCTGACC
CCGCCGTGGACCTTCTCCTTTCTGAAGATGAAGAGGAAGCTTCAGTTATTGCTGAGGAAATTGATTTGCTTAACAAAGAA
CGTCAGAAACTTGTTAGCACAATGACAGAAGAAGCAATCGAGGAGGTAGAAACCCGTTTTCCAATCGAGGATCATCCAGT
TCTTGTTATTGCTAGAGAAGGCTGGAATCCAGGTGTGGTGGGAATAGTTGCATCAAGGCTTGTAGACCGCTTTTATCGTC
CAACAATTGTTTTAAGCATTGATAGAGAAAAAGGAATTGCAAAAGGGTCAGCCCGAAGTATCGTTGGCTTTGATTTGTTT
GAAAATCTATCAACATGTCGCGATATTCTTCCGCATTTTGGAGGGCACCCCATGGCTGCAGGTATGACATTAAATCTGGA
AGATGTTGATTCACTACGAGAAAGACTTGTTGAAAAGGCAAAAAACATATTAACAGAAAATGATTTTATACCGGTAACAA
AAGTGGATGTAAGCTGTAATCTAGAAGATATTTCAGTTAATTCAATTGAAGAAATGCAACTTCTTTCACCCTTTGGTATG
AATAACCCTAAACCTGTCATTCAAATAGAGAATGTTACATTGGCAAATGTTCGAAAAATTGGTTCTGAACAAAATCATTT
AAAGCTGGTTTTTTCGCAAGAAGATTGTCAGCTTGATTGCGTTGGGTTTGGTATGGGGTATATCCATGATGAACTGTCAC
CCTCTGTTACTTTATCGGCAATTGGGGAATTATCTATTAATGAGTGGAATAATCTTCGCAAACCCCAAATCATGTTACAA
GATATCAAGGTTGATGAGTGGCAGTTGTTCGATTTTAGAGGAACAAGAAATGTCGACAAGCTAGTGAGTTCAGTGACAAC
TTTAGAAGAGAGCATCATTGTTACTTTTGAGGAAACAACGCATGATTACGTGAAGAATTTAGGCTTCGAACAAAAAGCAA
TGTTAGTAAAAACAAAACAAGATGCCCTAAATCTATCTGTTAAAAATAAACATGTTATTTTAATGGATATTCCATCATCA
CTTGATCATTTTGATGCGCTTTTTTCTGAAGGAAAGCCAGCAAGAATTTACACAGTGTTTCAACAGGATTCAGATCACTT
CTTTTCAACGATTCCAACAAGAGAACACTTTAAATGGTATTATGGATTTCTGTTAAAGAAAGGCTCTTTCAAGCTCCATG
AGCGAGGTAAACAACTTGCGGCTCACAAGGGATGGACAAAAGAAACAATTGAGTTCATGTCACAGGTGTTTTTTGAACTA
GAATTTGTTACAATAGAAAATGGTGTTATTTCGACAAATTCTTCAACTCGAAAACGAGATTTAACAGAATCGAAAACATA
TGCCCAAAAACAAATGAGATTAGAATTAGAAAAAACGTTATTATATACATCTTACATGCAGCTTAAGCAGTGGTTTGAAG
AAAGATTTCCATTAGATGCGCCTGTAGGTGTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-772)

DHHA1 domain (DHHA1)

(317-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

58.333

99.49

0.58