Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LPC09_RS18085 Genome accession   NZ_CP088245
Coordinates   3546914..3549268 (-) Length   784 a.a.
NCBI ID   WP_231307933.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3541914..3554268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS18070 (LPC09_18070) dtd 3543383..3543823 (-) 441 WP_098797933.1 D-aminoacyl-tRNA deacylase -
  LPC09_RS18075 (LPC09_18075) - 3543837..3546044 (-) 2208 WP_098797934.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LPC09_RS18080 (LPC09_18080) - 3546385..3546897 (-) 513 WP_098797935.1 adenine phosphoribosyltransferase -
  LPC09_RS18085 (LPC09_18085) recJ 3546914..3549268 (-) 2355 WP_231307933.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LPC09_RS18090 (LPC09_18090) - 3549356..3549700 (-) 345 WP_231307934.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  LPC09_RS18095 (LPC09_18095) - 3549719..3550612 (-) 894 WP_231307935.1 cation diffusion facilitator family transporter -
  LPC09_RS18100 (LPC09_18100) secDF 3550753..3552996 (-) 2244 WP_098798780.1 protein translocase subunit SecDF -
  LPC09_RS18105 (LPC09_18105) - 3553134..3553427 (-) 294 WP_098798779.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87919.50 Da        Isoelectric Point: 4.9340

>NTDB_id=633481 LPC09_RS18085 WP_231307933.1 3546914..3549268(-) (recJ) [Metabacillus sp. B2-18]
MLKAKTRWMVQSSDETLIGTLIDNLSITPLVASLLVNRGIHSVEEAREFLEIEKQSFHDPFLLKDMDKAVHRIKTAIEQN
EHILVYGDYDADGVSSTTVLLTALRTLGANVDFYIPNRFTEGYGPNEAAFRHAHEKGFSLIITVDTGIAAVHEAQVAKEL
GIDVIITDHHEPGPILPEAIAIIHPKQPGCTYPFKELAGVGVAFKLSHALLGDVPTDLLEVAAIGTIADLVALHDENRLI
AKKGINQLKTTKRVGLKSLLKIANVKMDEINEDTIGFALGPRINAVGRLQSADPAVDLLLSEDEEEAAAIAEEIDSLNKE
RQKLVSTMTEEAIEEVETRFPIEDHPVLVIAREGWNPGVVGIVASRLVDRFYRPTIVLSIDREKGIAKGSARSIVGFDLF
ENLSTCRDILPHFGGHPMAAGMTLNLDDVDLLRERLVEKAQNILTENDFIPVTKVDVSCNLEDISVNSIEEMQLLSPFGM
NNPKPVIQIENVTLANVRKIGAEQNHLKLVFSQEDYQLDCVGFGMGYIHDELSPSVTLSAIGELSINEWNNLRKPQIMLQ
DIKVDEWQLFDFRGTRNVDKLVSSVATIDKSIIVTFQEKTHDYVKSIGFEQKAMFLKTKQDAINLSVQNKHVILMDIPSS
LDSFDALFSEGKPARIYSVFQQDSDHFFSTIPTREHFKWYYGFLLKKGSFKLQEQGEQLAAHKGWTKETIEFMSQVFFEL
EFVTIENGVISTNSSTRKRDLTESKTYAQKQMRIELEKTLLYTSYMQLKQWFEERFPLDAPVGV

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=633481 LPC09_RS18085 WP_231307933.1 3546914..3549268(-) (recJ) [Metabacillus sp. B2-18]
ATGTTAAAGGCAAAAACAAGATGGATGGTTCAATCATCTGATGAAACCTTAATTGGGACACTAATTGATAACTTATCCAT
TACACCGTTAGTCGCATCTTTACTTGTAAATAGAGGCATACATTCAGTAGAAGAAGCACGTGAATTCTTGGAAATTGAAA
AACAATCTTTTCATGATCCGTTTCTTCTAAAAGATATGGACAAGGCTGTCCACCGAATAAAAACGGCGATAGAACAAAAT
GAGCATATATTAGTTTATGGAGATTATGATGCTGATGGAGTAAGCAGTACAACTGTATTATTAACAGCTTTACGTACACT
GGGTGCAAACGTAGATTTCTATATTCCAAATCGATTTACCGAGGGATATGGACCAAATGAAGCTGCTTTTAGACATGCAC
ATGAAAAGGGTTTTTCTTTAATCATTACAGTTGATACAGGAATTGCAGCAGTTCATGAAGCTCAAGTGGCAAAAGAATTA
GGGATAGACGTGATTATTACTGACCACCATGAGCCAGGTCCGATCCTTCCAGAAGCAATTGCGATTATCCATCCAAAACA
ACCAGGGTGTACCTATCCTTTTAAAGAGCTTGCTGGGGTTGGAGTTGCCTTTAAATTAAGTCATGCTCTGCTTGGTGACG
TTCCAACTGATTTATTAGAAGTAGCAGCAATAGGAACAATTGCAGATTTAGTAGCACTTCATGATGAAAATAGATTAATA
GCTAAAAAAGGTATAAATCAGTTAAAAACAACAAAACGTGTTGGACTAAAATCATTGTTGAAAATTGCCAATGTCAAGAT
GGATGAAATAAATGAGGATACGATAGGTTTTGCACTGGGGCCGCGAATTAATGCAGTTGGTCGTTTACAATCAGCTGACC
CCGCAGTGGATCTTCTTCTTTCTGAAGATGAAGAGGAAGCTGCAGCTATTGCAGAGGAAATTGATTCTCTTAACAAAGAA
CGTCAGAAACTTGTTAGCACAATGACAGAAGAAGCAATTGAGGAGGTTGAAACTCGTTTTCCGATCGAGGATCATCCAGT
TCTAGTTATTGCTAGAGAAGGCTGGAATCCAGGTGTGGTTGGTATAGTTGCATCAAGGCTTGTAGATCGTTTTTATCGTC
CAACAATTGTTTTAAGCATTGATAGAGAAAAAGGAATTGCAAAAGGATCAGCTCGAAGTATCGTTGGCTTTGATTTGTTT
GAAAATCTATCAACATGTCGCGATATTCTTCCTCATTTTGGTGGGCACCCAATGGCAGCAGGTATGACACTAAATCTGGA
TGATGTTGATTTACTAAGAGAAAGACTTGTTGAAAAGGCACAAAACATATTAACAGAAAATGATTTTATACCGGTAACAA
AAGTGGATGTAAGCTGTAATTTAGAAGATATTTCAGTTAATTCAATAGAAGAAATGCAGCTTCTTTCACCCTTTGGAATG
AACAATCCTAAACCTGTTATTCAAATTGAAAATGTTACATTAGCAAATGTTCGGAAAATTGGTGCTGAACAAAATCATCT
AAAGTTGGTTTTTTCTCAAGAAGATTATCAGCTTGATTGCGTTGGGTTTGGTATGGGGTATATCCATGATGAACTTTCAC
CCTCTGTTACTTTATCAGCAATTGGGGAACTATCTATTAATGAGTGGAATAATCTTCGCAAACCACAAATCATGTTACAA
GACATTAAGGTTGATGAGTGGCAGCTGTTTGATTTTAGAGGAACAAGAAATGTGGACAAGCTTGTAAGTTCAGTAGCAAC
TATAGATAAAAGTATAATTGTTACTTTTCAGGAAAAAACGCATGATTATGTGAAGAGTATAGGCTTCGAACAAAAAGCTA
TGTTTTTAAAAACAAAACAAGATGCCATAAATCTATCTGTTCAAAATAAACATGTTATTTTAATGGATATTCCATCATCA
CTAGATTCTTTTGATGCACTTTTTTCTGAAGGAAAGCCTGCAAGAATTTACTCGGTATTTCAACAAGATTCAGATCACTT
TTTTTCAACGATTCCGACAAGAGAACACTTTAAATGGTATTATGGATTTCTTTTAAAGAAAGGCTCTTTTAAGCTTCAAG
AGCAAGGTGAACAACTAGCTGCTCATAAGGGTTGGACAAAAGAAACAATTGAGTTCATGTCACAGGTGTTTTTTGAACTA
GAATTTGTTACAATAGAAAATGGTGTTATTTCGACAAATTCTTCAACTCGAAAACGAGATTTAACAGAATCGAAAACATA
TGCCCAAAAACAAATGAGAATAGAACTAGAAAAAACGTTATTATATACATCTTACATGCAGCTTAAGCAGTGGTTTGAAG
AAAGATTTCCATTAGATGCGCCTGTAGGTGTATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-772)

DHHA1 domain (DHHA1)

(305-438)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

58.462

99.49

0.582