Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LRR82_RS07545 Genome accession   NZ_CP088239
Coordinates   1536317..1538158 (-) Length   613 a.a.
NCBI ID   WP_249028821.1    Uniprot ID   -
Organism   Tannockella kyphosi strain BP52G     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531317..1543158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR82_RS07510 - 1531391..1531789 (-) 399 WP_249028815.1 hypothetical protein -
  LRR82_RS07520 - 1532512..1533855 (-) 1344 WP_249028816.1 RNA-binding domain-containing protein -
  LRR82_RS10970 - 1534493..1534729 (-) 237 WP_399201167.1 DDE-type integrase/transposase/recombinase -
  LRR82_RS10975 - 1534802..1534915 (-) 114 WP_249028817.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LRR82_RS07530 - 1535109..1535411 (-) 303 WP_249028818.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  LRR82_RS07535 - 1535458..1535607 (-) 150 WP_249028819.1 hypothetical protein -
  LRR82_RS07540 - 1535692..1536285 (-) 594 WP_249028820.1 magnesium transporter MgtE N-terminal domain-containing protein -
  LRR82_RS07545 rcrQ 1536317..1538158 (-) 1842 WP_249028821.1 ABC transporter ATP-binding protein Regulator
  LRR82_RS07550 - 1538151..1539905 (-) 1755 WP_249028822.1 ABC transporter ATP-binding protein -
  LRR82_RS07555 - 1539889..1541277 (-) 1389 WP_249028823.1 MATE family efflux transporter -
  LRR82_RS07560 - 1541298..1541714 (-) 417 WP_249028824.1 MarR family winged helix-turn-helix transcriptional regulator -
  LRR82_RS07565 - 1541944..1542642 (-) 699 WP_249028825.1 AAA family ATPase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67288.03 Da        Isoelectric Point: 7.5692

>NTDB_id=633385 LRR82_RS07545 WP_249028821.1 1536317..1538158(-) (rcrQ) [Tannockella kyphosi strain BP52G]
MHNKETKPQNTGVNLGPPGGPPGGRPGDKAKDFTGSLKKLFAYCGRYTVFVAIAIVLAITSSVFSLMGPSRLTKITNLIL
EGMSEGVDLEAVASIGTFLAILYGLSLVFGYLQGSILAVVSQKICKKLRTEMTSKINRLPLAYFDGTSYGDTLSRFVNDI
DTIGTSLNQSMSSIVSGVLNFSGALLLMLYTNWIMGISGLLSTIFGFSFMAIIIAKSQKHFIQQQMRLGDLNGHVEETYT
GHSIIKAYNKETFVEKHFHKKNEKLYQSAWKAQFLSGMMMPIMNFTGDFSYVVVCIVGALLVINGSITFGVIVAFMVYIR
LFTQPLATLAQSVTTLQSAAAASERVFEFLEEKELSPEEKGAVKIKNIKGDVSFKNVTFGYTPDKMIITDFNAEIKAGEK
VAIVGPTGAGKTTMVNLLMRFYEVNSGEISIDGIPIRSITRESLHDVFSMVLQDTWMFDGTIMENIAYNQNVSEDEIIAA
CKSVGIHHTIKTMPKGYHTIMSNAALSTGEKQLLTIARAMVKKSELIILDEATSSVDTRTELLIGKAMDKLSQGKTSFII
AHRLSTIKNADIILVMKDGNIIESGSHEKLLNQKGFYAELYNSQFEEVTDDTH

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=633385 LRR82_RS07545 WP_249028821.1 1536317..1538158(-) (rcrQ) [Tannockella kyphosi strain BP52G]
ATGCATAACAAAGAGACAAAACCACAAAATACAGGTGTGAATTTAGGACCACCAGGAGGTCCTCCTGGAGGAAGACCTGG
CGATAAGGCAAAAGATTTTACAGGAAGTCTAAAGAAATTATTTGCATATTGTGGACGATATACAGTTTTCGTAGCGATTG
CAATTGTTTTAGCAATTACATCTTCTGTTTTCTCGCTTATGGGACCAAGCAGATTGACCAAGATTACAAATCTGATTTTA
GAAGGAATGTCAGAAGGTGTGGATTTAGAGGCCGTTGCAAGTATTGGTACATTCTTGGCGATTCTCTATGGATTAAGCCT
TGTATTTGGATATCTTCAAGGAAGTATTCTAGCAGTTGTTTCTCAAAAAATTTGTAAAAAATTACGTACTGAAATGACAA
GTAAAATAAATCGTTTACCACTTGCATATTTTGATGGAACTTCATATGGGGATACACTCAGTCGCTTCGTAAATGATATT
GATACAATAGGTACTAGTTTAAATCAAAGTATGTCCTCAATTGTTAGTGGCGTTTTGAATTTTAGTGGAGCACTATTACT
TATGTTATATACAAACTGGATTATGGGGATTTCTGGTTTGCTTTCAACCATATTTGGATTTTCTTTTATGGCTATCATTA
TAGCAAAATCTCAGAAACACTTTATACAACAACAAATGAGACTTGGTGATTTAAATGGTCATGTCGAAGAAACTTACACT
GGGCACTCCATTATAAAAGCCTATAATAAAGAAACGTTTGTAGAAAAGCATTTCCATAAAAAGAATGAGAAATTATATCA
GTCAGCATGGAAAGCGCAATTTTTATCTGGGATGATGATGCCTATTATGAATTTCACAGGTGATTTCTCATATGTAGTTG
TATGTATAGTTGGAGCATTGCTTGTAATAAATGGAAGTATTACGTTCGGTGTAATCGTAGCATTCATGGTGTATATTCGT
CTATTTACACAACCACTGGCAACACTAGCACAATCGGTGACAACATTGCAATCAGCAGCGGCAGCAAGTGAGCGTGTATT
TGAATTTCTTGAAGAGAAAGAACTGTCGCCAGAAGAAAAGGGTGCAGTAAAGATTAAAAATATTAAAGGTGATGTAAGCT
TCAAAAATGTAACATTTGGATACACTCCAGATAAAATGATTATTACTGATTTTAATGCAGAAATTAAAGCTGGAGAGAAA
GTGGCGATTGTAGGACCTACAGGTGCAGGAAAAACAACTATGGTAAATCTGCTTATGCGTTTTTATGAAGTGAATAGCGG
AGAGATTTCTATTGATGGCATTCCTATTCGCTCTATAACGAGAGAGAGTCTACACGATGTGTTTTCTATGGTATTGCAAG
ACACATGGATGTTTGATGGCACTATTATGGAAAATATTGCATATAATCAAAATGTTTCAGAAGATGAAATCATTGCGGCA
TGTAAATCTGTTGGAATTCATCATACTATTAAAACGATGCCAAAAGGATATCATACCATTATGAGTAACGCTGCCTTATC
AACAGGAGAAAAGCAATTACTTACCATCGCACGTGCGATGGTTAAGAAATCAGAATTAATAATTTTAGACGAGGCTACAA
GTTCCGTTGATACAAGAACAGAGTTATTAATCGGTAAGGCAATGGATAAGTTGTCTCAAGGAAAAACATCTTTTATCATT
GCACACAGACTGTCTACAATTAAAAATGCAGATATTATATTAGTAATGAAAGACGGTAATATTATAGAAAGCGGTAGCCA
TGAGAAACTTTTAAACCAAAAAGGATTCTATGCGGAACTTTATAATAGTCAATTTGAAGAAGTAACGGATGATACGCACT
AA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-534)

ABC transporter transmembrane region (ABC_membrane)

(52-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.007

93.475

0.486