Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LRR82_RS06425 Genome accession   NZ_CP088239
Coordinates   1295225..1297078 (-) Length   617 a.a.
NCBI ID   WP_399201152.1    Uniprot ID   -
Organism   Tannockella kyphosi strain BP52G     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290225..1302078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR82_RS06405 - 1291678..1292208 (-) 531 WP_249028608.1 hypothetical protein -
  LRR82_RS06410 tnpA 1292287..1292685 (+) 399 WP_249028609.1 IS200/IS605 family transposase -
  LRR82_RS06415 - 1292714..1294210 (+) 1497 WP_249028610.1 transposase -
  LRR82_RS06420 - 1294374..1295072 (-) 699 WP_249028611.1 AAA family ATPase -
  LRR82_RS06425 rcrQ 1295225..1297078 (-) 1854 WP_399201152.1 ABC transporter ATP-binding protein Regulator
  LRR82_RS06430 - 1297071..1299293 (-) 2223 WP_249028612.1 ABC transporter ATP-binding protein -
  LRR82_RS06435 - 1299290..1299751 (-) 462 WP_249028613.1 MarR family winged helix-turn-helix transcriptional regulator -
  LRR82_RS06440 - 1299828..1300244 (-) 417 WP_249028614.1 C-GCAxxG-C-C family protein -
  LRR82_RS06445 - 1300246..1301487 (-) 1242 WP_249028615.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68381.50 Da        Isoelectric Point: 5.0065

>NTDB_id=633384 LRR82_RS06425 WP_399201152.1 1295225..1297078(-) (rcrQ) [Tannockella kyphosi strain BP52G]
MDKRTPTVERQKGPMGGGPGPKLGAMEKANDLPGTLKKLFQYLKPYHFKLLIVVVFAAGSTIFSIVGPKILALATDELSE
GIMGKIQGTGSIDFTYIGKIVLVLVAFYLVSMVFSLVQGIVVSGVSQKVAYDLRESLSKKMSRMPLKYFDKHTSGDTLSR
VTNDIDTIAQSLNQSMSQIITSFVTVVGIFIMMLTINVTMTFIALLVLPTSMILIASVMKFSQKHFTQQQNSLGDVNGHV
EEMYGGHQVVKAFNGELASVEQFEIYNDSLYNSAWKSQFFSGLMMPLVQFVGNVGYVAVCIVGGMLATGGTVSIGDIQAF
ITYVRSFNQPISQLAQVMNYLQSTAAAAERVFAFLEEEEIDEEEDNLTDKQIEHIKGSVTFDHVRFGYNPEKVIINDFSM
HVHSGQTVAIVGPTGAGKTTIVKLLMRFYELNSGSIFIDGHDICDFSRHDLRDQFGMVLQDTWLFNGTIEDNLKYGNLEA
TKEEFQNACNMAYVDHFVNTLEDGYQTILNEESSNISSGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEK
LMEGRTSFVIAHRLSTIRDADIIIVLKDGDIVETGNHDALIEKDGFYASLYQSQFEQ

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=633384 LRR82_RS06425 WP_399201152.1 1295225..1297078(-) (rcrQ) [Tannockella kyphosi strain BP52G]
ATGGATAAACGTACTCCTACTGTAGAACGACAAAAAGGCCCAATGGGTGGAGGTCCTGGACCAAAATTAGGTGCAATGGA
AAAAGCAAATGATTTACCAGGTACTTTAAAGAAATTATTTCAATATTTAAAGCCTTATCATTTTAAATTATTAATTGTTG
TTGTTTTTGCTGCAGGTTCTACTATTTTTAGTATTGTTGGACCTAAGATTTTAGCATTAGCTACGGATGAATTAAGTGAA
GGTATTATGGGGAAAATACAAGGAACAGGTAGTATTGATTTTACGTATATTGGTAAAATAGTGCTTGTTTTAGTAGCTTT
CTATTTAGTTAGTATGGTATTTAGTTTAGTACAAGGGATTGTTGTATCTGGTGTATCACAAAAAGTAGCATATGACTTAC
GTGAATCTTTATCAAAGAAAATGAGTAGAATGCCATTAAAATACTTTGATAAACATACAAGTGGTGATACATTATCACGT
GTTACAAATGATATTGATACAATTGCTCAATCTTTAAATCAAAGTATGTCTCAAATTATTACTTCTTTTGTAACAGTAGT
TGGTATCTTTATTATGATGTTAACTATTAATGTAACAATGACTTTTATAGCTTTATTAGTTTTACCAACTAGTATGATTT
TAATAGCTTCTGTAATGAAGTTTTCACAAAAACATTTTACACAACAACAAAATAGTTTAGGTGATGTGAATGGTCATGTG
GAAGAAATGTATGGTGGACATCAAGTAGTAAAAGCATTTAATGGAGAACTAGCTTCAGTAGAACAGTTTGAAATATATAA
TGATAGTTTATATAACTCAGCATGGAAATCACAATTCTTTTCAGGATTAATGATGCCTTTGGTACAATTTGTTGGTAATG
TTGGTTATGTGGCAGTATGTATTGTTGGTGGTATGTTGGCAACTGGTGGAACAGTTAGTATTGGGGATATTCAAGCCTTT
ATTACGTATGTTCGTTCTTTTAATCAACCAATTAGTCAATTAGCACAAGTTATGAACTATTTACAATCGACTGCAGCAGC
TGCAGAACGTGTTTTTGCCTTTTTAGAAGAAGAGGAAATTGACGAAGAAGAAGATAATTTAACAGATAAACAAATTGAAC
ATATCAAAGGTAGTGTAACTTTTGATCATGTAAGATTTGGTTATAATCCAGAAAAAGTAATTATCAATGACTTTAGTATG
CATGTTCATAGTGGTCAAACAGTAGCTATTGTAGGACCAACAGGAGCTGGTAAAACAACGATTGTTAAATTATTAATGAG
ATTCTATGAATTAAATAGTGGTTCTATCTTTATTGATGGACATGATATTTGTGATTTTTCTAGACACGATTTACGTGATC
AGTTTGGTATGGTATTACAAGATACTTGGTTATTTAATGGTACGATAGAAGATAACTTAAAATATGGTAACTTAGAAGCA
ACAAAAGAAGAATTCCAAAATGCATGTAACATGGCTTATGTCGATCATTTTGTAAATACATTAGAAGATGGATATCAAAC
TATCTTAAATGAAGAATCATCTAATATTTCTTCTGGTCAAAAACAATTATTAACAATTGCCAGAGCATTCTTAAAAGATC
CTAAAATATTAATCTTAGATGAAGCAACATCATCTGTTGATACACGTACCGAAGTGTTAATACAAAAAGGAATGGAAAAA
CTAATGGAAGGTAGAACAAGCTTTGTTATTGCACATCGTCTTTCTACTATTCGTGATGCAGATATTATCATTGTATTAAA
AGATGGGGATATTGTAGAAACAGGAAATCATGATGCATTAATTGAAAAAGATGGATTCTATGCATCTTTATATCAATCAC
AATTTGAACAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(396-544)

ABC transporter transmembrane region (ABC_membrane)

(50-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.68

95.3

0.483