Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KO561_RS11690 Genome accession   NZ_CP088020
Coordinates   2239837..2242152 (-) Length   771 a.a.
NCBI ID   WP_231093434.1    Uniprot ID   -
Organism   Radiobacillus kanasensis strain 80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2234837..2247152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO561_RS11670 (KO561_11670) - 2235005..2235271 (-) 267 WP_231093430.1 IreB family regulatory phosphoprotein -
  KO561_RS11675 (KO561_11675) alaS 2235371..2238019 (-) 2649 WP_231093431.1 alanine--tRNA ligase -
  KO561_RS11680 (KO561_11680) - 2238334..2239401 (-) 1068 WP_231093432.1 AI-2E family transporter -
  KO561_RS11685 (KO561_11685) - 2239499..2239687 (-) 189 WP_231093433.1 DUF2797 domain-containing protein -
  KO561_RS11690 (KO561_11690) recD2 2239837..2242152 (-) 2316 WP_231093434.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KO561_RS11695 (KO561_11695) - 2242167..2242838 (-) 672 WP_231093435.1 tetratricopeptide repeat protein -
  KO561_RS11700 (KO561_11700) mnmA 2242948..2244060 (-) 1113 WP_231093436.1 tRNA 2-thiouridine(34) synthase MnmA -
  KO561_RS11705 (KO561_11705) - 2244088..2245230 (-) 1143 WP_231093437.1 cysteine desulfurase family protein -
  KO561_RS11710 (KO561_11710) cymR 2245259..2245678 (-) 420 WP_231093438.1 cysteine metabolism transcriptional regulator CymR -
  KO561_RS11715 (KO561_11715) - 2245632..2246270 (-) 639 WP_231097121.1 YitT family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87822.99 Da        Isoelectric Point: 5.0410

>NTDB_id=632505 KO561_RS11690 WP_231093434.1 2239837..2242152(-) (recD2) [Radiobacillus kanasensis strain 80]
MEKESRKGFIKGELIHTIFTNEQEHFSIARIKVLETDEEVEEKELVVKGYFTRLDPGEIYLFQGEFENHKRFGRQYQVHH
YERFIPETTDGIVSYLSSDLFYGIGKKTAQKIVDILGETAINQIMNDASVLKKVPGLKSEQAEQLRRSLQEHQGFEHIVV
NLSKYGFGLKMAQKIYEAYKDKALEVLENDPYQFVFDIEGFGFQRADEVAAKKGILKNHPSRIQAGCIYVLHQSTFSGHV
YLPLEDLVSSVEQLLNQRVSEVTFDEISKEVITLNTDQKIIVQDSKAYLPSLYYAETGFCSQLHRIMSEKAEEEVPTAEL
LKIIGALEEEEALSYGKKQFEAIEQALHSKVMILTGGPGTGKTTVIKGIINAYSGLYDLSLEPKDYDNELTFPFLLTAPT
GRAAKRLSESTGLPAMTIHRLLGWNGHETFEKDSDNPLSGKLIVIDEFSMVDTWLANQLFRAIPKDMRVLIVGDEDQLPS
VGPGQVLADLLASKQIPSVQLDEVYRQKEGSKIIQLAHEIKNNTCDLDSLQKDADFNFIPCGEHQVLDVVNQIVQKAYEK
GVDMKDLQILAPMYKTKAGIHRINEQIQMIVNPPNQQKRHIKWGEVEYRTGDKVIQLVNQPEDGVFNGDIGEIVAIFKES
ETEDKTEQIVISFDEKEVLYLKKDLNHITHAYCTSIHKSQGSEFQIVVLPVVPSYRRMLRKNLLYTAITRSKNSLIICGD
KHSFLQGIKEEDTNMRYTSLVSFLQEIFQLDQKVKEQVEEENEEISPYDFL

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=632505 KO561_RS11690 WP_231093434.1 2239837..2242152(-) (recD2) [Radiobacillus kanasensis strain 80]
ATGGAAAAGGAAAGTAGAAAAGGGTTCATAAAGGGTGAACTCATCCATACCATTTTTACAAATGAACAAGAACACTTTTC
CATTGCCCGGATTAAGGTTTTAGAGACGGACGAAGAGGTCGAGGAAAAGGAACTCGTCGTAAAAGGGTATTTTACCCGCC
TTGATCCAGGGGAGATCTATCTTTTTCAAGGAGAATTTGAGAACCATAAACGTTTTGGGAGGCAATATCAAGTCCATCAT
TATGAGCGTTTCATTCCGGAAACTACAGATGGTATCGTTTCTTATTTATCTAGTGATTTGTTTTATGGGATCGGAAAAAA
GACAGCCCAAAAGATTGTAGATATATTAGGAGAAACCGCGATTAACCAAATAATGAATGATGCATCTGTTCTGAAAAAGG
TTCCGGGATTAAAATCGGAGCAAGCAGAACAGCTAAGACGCTCTTTGCAAGAACATCAAGGCTTCGAACACATCGTCGTT
AATCTATCGAAATATGGTTTTGGTTTGAAGATGGCACAAAAGATTTATGAAGCTTATAAAGATAAAGCATTGGAAGTATT
GGAGAATGACCCGTACCAGTTTGTATTTGACATCGAAGGTTTTGGATTTCAACGAGCGGACGAAGTAGCAGCGAAAAAAG
GTATCTTGAAGAACCATCCTAGTAGAATTCAAGCAGGCTGTATTTATGTCCTCCATCAAAGTACGTTTAGTGGTCATGTT
TATTTACCGTTGGAAGATTTGGTGAGTAGTGTGGAACAATTGCTTAACCAACGGGTTTCGGAAGTAACGTTTGACGAGAT
TTCAAAAGAAGTAATCACTCTCAATACAGATCAAAAGATTATTGTACAGGACTCGAAAGCTTACTTGCCAAGTCTTTATT
ACGCGGAAACAGGTTTTTGCTCACAGCTCCACCGAATAATGAGTGAAAAGGCGGAAGAGGAAGTTCCAACTGCTGAATTA
TTAAAAATAATTGGGGCTTTGGAGGAAGAAGAGGCATTAAGCTATGGAAAAAAACAATTTGAAGCGATTGAACAAGCCTT
ACATTCAAAAGTGATGATTCTAACTGGTGGTCCAGGAACAGGGAAAACGACGGTTATAAAAGGAATCATTAATGCTTACT
CTGGTCTCTATGATCTATCTTTAGAACCTAAGGATTATGATAATGAGCTTACATTTCCGTTTCTTTTGACTGCGCCTACC
GGTCGTGCAGCTAAAAGATTATCAGAGTCGACTGGCCTTCCTGCTATGACGATACATCGACTACTCGGATGGAACGGTCA
CGAAACATTTGAAAAGGATAGCGATAACCCATTATCCGGAAAGCTAATTGTCATTGATGAGTTTTCCATGGTGGATACGT
GGTTGGCGAATCAATTATTTCGAGCCATCCCGAAAGATATGCGTGTTCTCATTGTTGGGGATGAAGACCAACTACCATCG
GTTGGTCCAGGACAAGTGCTCGCTGATTTATTAGCGAGTAAGCAGATTCCCTCGGTTCAACTTGACGAGGTGTACCGTCA
GAAGGAAGGTTCTAAAATCATTCAGCTCGCACATGAAATTAAGAACAACACGTGTGATTTGGATTCTCTGCAGAAGGATG
CAGACTTTAATTTTATTCCATGTGGCGAACATCAAGTGTTGGATGTCGTTAACCAAATCGTGCAAAAGGCGTACGAAAAA
GGGGTCGACATGAAAGATTTGCAAATTCTTGCTCCCATGTATAAGACCAAAGCAGGCATCCATCGTATAAACGAACAAAT
CCAAATGATTGTCAACCCACCAAACCAGCAAAAGCGCCACATTAAATGGGGAGAAGTCGAGTATCGAACAGGTGATAAAG
TGATTCAACTCGTCAATCAACCAGAGGATGGAGTTTTTAATGGAGATATTGGCGAAATTGTAGCGATCTTTAAAGAATCA
GAAACCGAAGATAAAACCGAGCAAATCGTTATTTCTTTTGATGAAAAAGAAGTTTTGTATCTAAAAAAAGATTTGAATCA
TATCACGCACGCCTACTGCACGTCGATTCATAAGTCACAAGGTAGCGAGTTTCAAATCGTAGTATTACCAGTGGTCCCGA
GCTATCGTCGTATGTTACGAAAAAATTTGTTATATACCGCGATTACTCGAAGTAAAAACTCATTGATCATTTGCGGAGAC
AAGCATTCTTTCTTGCAAGGGATAAAAGAAGAGGATACGAATATGAGATATACGTCCCTAGTATCTTTCTTACAAGAAAT
CTTTCAGTTGGATCAAAAGGTAAAAGAACAAGTGGAAGAGGAAAATGAAGAAATATCCCCATACGACTTTTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-241)

AAA domain (AAA_30)

(335-542)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(583-653)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.78

100

0.493