Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5P33_RS22880 Genome accession   NZ_CP104720
Coordinates   4910608..4911033 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain NY4593     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4905608..4916033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P33_RS22865 (N5P33_22865) pilX 4906172..4906759 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  N5P33_RS22870 (N5P33_22870) pilY1 4906771..4910262 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  N5P33_RS22875 (N5P33_22875) pilY2 4910264..4910611 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  N5P33_RS22880 (N5P33_22880) comF 4910608..4911033 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  N5P33_RS22885 (N5P33_22885) ispH 4911080..4912024 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P33_RS22890 (N5P33_22890) fkpB 4912110..4912550 (-) 441 WP_034071578.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  N5P33_RS22895 (N5P33_22895) lspA 4912543..4913052 (-) 510 WP_003102615.1 signal peptidase II -
  N5P33_RS22900 (N5P33_22900) ileS 4913045..4915876 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=632491 N5P33_RS22880 WP_003094721.1 4910608..4911033(+) (comF) [Pseudomonas aeruginosa strain NY4593]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=632491 N5P33_RS22880 WP_003094721.1 4910608..4911033(+) (comF) [Pseudomonas aeruginosa strain NY4593]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383