Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5P33_RS02475 Genome accession   NZ_CP104720
Coordinates   542159..542884 (-) Length   241 a.a.
NCBI ID   WP_034030268.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY4593     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 537159..547884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P33_RS02450 (N5P33_02450) - 537631..538146 (+) 516 WP_034060466.1 glycine cleavage system protein R -
  N5P33_RS02455 (N5P33_02455) rarD 538836..539732 (-) 897 WP_003103301.1 EamA family transporter RarD -
  N5P33_RS02460 (N5P33_02460) - 539935..540909 (-) 975 WP_003103303.1 serine/threonine protein kinase -
  N5P33_RS02465 (N5P33_02465) - 540971..541729 (-) 759 WP_261734978.1 TOBE domain-containing protein -
  N5P33_RS02470 (N5P33_02470) - 541797..542117 (-) 321 WP_034071710.1 YfiM family lipoprotein -
  N5P33_RS02475 (N5P33_02475) comF 542159..542884 (-) 726 WP_034030268.1 ComF family protein Machinery gene
  N5P33_RS02480 (N5P33_02480) - 543023..543316 (-) 294 WP_003084806.1 hypothetical protein -
  N5P33_RS02485 (N5P33_02485) - 543370..544296 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  N5P33_RS02490 (N5P33_02490) - 544414..545172 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  N5P33_RS02495 (N5P33_02495) - 545249..545497 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  N5P33_RS02500 (N5P33_02500) - 545508..546884 (+) 1377 WP_034071709.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  N5P33_RS02505 (N5P33_02505) - 546886..547764 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27112.59 Da        Isoelectric Point: 10.8076

>NTDB_id=632431 N5P33_RS02475 WP_034030268.1 542159..542884(-) (comF) [Pseudomonas aeruginosa strain NY4593]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=632431 N5P33_RS02475 WP_034030268.1 542159..542884(-) (comF) [Pseudomonas aeruginosa strain NY4593]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386