Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   N149_RS02095 Genome accession   NC_022660
Coordinates   424455..424970 (+) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli 15-537360     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419455..429970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS02070 (N149_1311) - 419912..420250 (+) 339 WP_002777761.1 hypothetical protein -
  N149_RS02075 (N149_1310) - 420259..420984 (+) 726 WP_023362104.1 phosphatidate cytidylyltransferase -
  N149_RS02080 (N149_1309) dxr 420981..422057 (+) 1077 WP_023362102.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  N149_RS02085 (N149_1307) - 422054..423447 (+) 1394 Protein_403 M99 family carboxypeptidase catalytic domain-containing protein -
  N149_RS02090 (N149_1306) tsaD 423444..424451 (+) 1008 WP_023362100.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  N149_RS02095 (N149_1305) ctsG 424455..424970 (+) 516 WP_002805379.1 type II secretion system protein Machinery gene
  N149_RS02100 (N149_1304) - 424970..426220 (+) 1251 WP_002817246.1 DUF2920 family protein -
  N149_RS02105 (N149_1303) - 426231..428054 (+) 1824 WP_023362098.1 motility associated factor glycosyltransferase family protein -
  N149_RS02110 (N149_1302) - 428051..429865 (+) 1815 WP_023362096.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=63238 N149_RS02095 WP_002805379.1 424455..424970(+) (ctsG) [Campylobacter coli 15-537360]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=63238 N149_RS02095 WP_002805379.1 424455..424970(+) (ctsG) [Campylobacter coli 15-537360]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778

Multiple sequence alignment