Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LNN31_RS17920 Genome accession   NZ_CP087994
Coordinates   3849000..3849176 (-) Length   58 a.a.
NCBI ID   WP_228879914.1    Uniprot ID   -
Organism   Acetobacterium wieringae strain Y     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3844000..3854176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN31_RS17910 (LNN31_17870) ltrA 3845277..3846692 (-) 1416 WP_263992676.1 group II intron reverse transcriptase/maturase -
  LNN31_RS17915 (LNN31_17875) - 3847158..3848996 (-) 1839 WP_228879912.1 ABC transporter ATP-binding protein -
  LNN31_RS17920 (LNN31_17880) rcrP 3849000..3849176 (-) 177 WP_228879914.1 hypothetical protein Regulator
  LNN31_RS17925 (LNN31_17885) - 3849185..3850726 (-) 1542 WP_228879915.1 ABC transporter ATP-binding protein -
  LNN31_RS17930 (LNN31_17890) - 3850982..3851989 (+) 1008 WP_228879917.1 hypothetical protein -
  LNN31_RS17935 (LNN31_17895) - 3852023..3852523 (-) 501 WP_228879919.1 hypothetical protein -
  LNN31_RS17940 (LNN31_17900) - 3852712..3853221 (-) 510 WP_148638579.1 ferritin-like domain-containing protein -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6416.37 Da        Isoelectric Point: 4.6094

>NTDB_id=632170 LNN31_RS17920 WP_228879914.1 3849000..3849176(-) (rcrP) [Acetobacterium wieringae strain Y]
MKDACLIVVAQRISSIMDADQIIVLDNGSIAGIGRHEELLRDCSLYREIADSQVKREG

Nucleotide


Download         Length: 177 bp        

>NTDB_id=632170 LNN31_RS17920 WP_228879914.1 3849000..3849176(-) (rcrP) [Acetobacterium wieringae strain Y]
ATGAAAGATGCCTGCCTGATAGTGGTGGCTCAGCGCATCAGCAGTATCATGGATGCGGATCAGATCATTGTGCTGGATAA
CGGAAGCATTGCGGGAATTGGCCGTCACGAAGAGCTTCTGAGAGACTGTAGTCTCTATCGGGAAATTGCAGATTCTCAGG
TTAAAAGGGAGGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.571

96.552

0.517