Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LOC77_RS08160 Genome accession   NZ_CP087957
Coordinates   1607292..1608071 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain B-001     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602292..1613071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS08140 trmFO 1602979..1604286 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LOC77_RS08145 xerC 1604356..1605273 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  LOC77_RS08150 hslV 1605289..1605834 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LOC77_RS08155 hslU 1605851..1607254 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  LOC77_RS08160 codY 1607292..1608071 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LOC77_RS08165 flgB 1608425..1608814 (+) 390 WP_095318220.1 flagellar basal body rod protein FlgB -
  LOC77_RS08170 flgC 1608814..1609266 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  LOC77_RS08175 fliE 1609277..1609597 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LOC77_RS08180 fliF 1609640..1611250 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  LOC77_RS08185 fliG 1611263..1612279 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LOC77_RS08190 fliH 1612272..1613027 (+) 756 WP_032856803.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=632033 LOC77_RS08160 WP_003154263.1 1607292..1608071(+) (codY) [Bacillus velezensis strain B-001]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=632033 LOC77_RS08160 WP_003154263.1 1607292..1608071(+) (codY) [Bacillus velezensis strain B-001]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCTCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471