Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   N5878_RS17935 Genome accession   NZ_CP104590
Coordinates   3843599..3844123 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain WTJH36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3838599..3849123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5878_RS17920 (N5878_17920) aroB 3839715..3840821 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  N5878_RS17925 (N5878_17925) aroK 3840871..3841389 (-) 519 WP_003095833.1 shikimate kinase AroK -
  N5878_RS17930 (N5878_17930) pilQ 3841401..3843545 (-) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  N5878_RS17935 (N5878_17935) comL/pilP 3843599..3844123 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  N5878_RS17940 (N5878_17940) pilO 3844120..3844743 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5878_RS17945 (N5878_17945) pilN 3844740..3845336 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  N5878_RS17950 (N5878_17950) pilM 3845336..3846400 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  N5878_RS17955 (N5878_17955) - 3846585..3849056 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=631382 N5878_RS17935 WP_003095836.1 3843599..3844123(-) (comL/pilP) [Pseudomonas aeruginosa strain WTJH36]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=631382 N5878_RS17935 WP_003095836.1 3843599..3844123(-) (comL/pilP) [Pseudomonas aeruginosa strain WTJH36]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362