Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LL948_RS07640 Genome accession   NZ_CP087726
Coordinates   1488070..1490508 (+) Length   812 a.a.
NCBI ID   WP_404337490.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain QJJ-917     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1483070..1495508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL948_RS07615 (LL948_07590) - 1483250..1484533 (-) 1284 WP_101190184.1 replication-associated recombination protein A -
  LL948_RS07620 (LL948_07595) cymR 1484671..1485087 (+) 417 WP_058380971.1 cysteine metabolism transcriptional regulator CymR -
  LL948_RS07625 (LL948_07600) - 1485102..1486235 (+) 1134 WP_404337487.1 cysteine desulfurase family protein -
  LL948_RS07630 (LL948_07605) mnmA 1486251..1487369 (+) 1119 WP_101805395.1 tRNA 2-thiouridine(34) synthase MnmA -
  LL948_RS07635 (LL948_07610) - 1487384..1488043 (+) 660 WP_180956268.1 lipopolysaccharide assembly protein LapB -
  LL948_RS07640 (LL948_07615) recD2 1488070..1490508 (+) 2439 WP_404337490.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LL948_RS07645 (LL948_07620) alaS 1490816..1493440 (+) 2625 WP_101190186.1 alanine--tRNA ligase -
  LL948_RS07650 (LL948_07625) - 1493528..1493794 (+) 267 WP_058383651.1 IreB family regulatory phosphoprotein -
  LL948_RS07655 (LL948_07630) ruvX 1493797..1494213 (+) 417 WP_068461903.1 Holliday junction resolvase RuvX -
  LL948_RS07660 (LL948_07635) - 1494227..1494535 (+) 309 WP_101190187.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 89772.51 Da        Isoelectric Point: 4.9911

>NTDB_id=631256 LL948_RS07640 WP_404337490.1 1488070..1490508(+) (recD2) [Planococcus rifietoensis strain QJJ-917]
MSGQIDLFQKESEFVLGRPVVSIFHNPQNLFSIIKVKIQQTNTPYTEKEIIVSGYFPKLSLEEQYKFTGSVKNHPKYGVQ
FQAETFKKEVPETEQGVVHYLSSDLFNGIGRKTAETIVKKLGSDAIKKILEDPDALDGVPRLSDDKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQIGMRIYQAYREETIDILTKNPFQLIEEIEGIGFHRADELGSKLGITGSHPDRIKAAILHVLNQAS
LSEGHVFVDAKNLIPLVKQMLEASQREDIPVDSISKAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLIAEQETR
DGFPSSEIRKALGEAEERLGVNYAETQIDAIEKSLNSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEREEETEKDIEGKLIIIDEMSMVDTWLAHQLLKAVPVDAQLIFV
GDQDQLPPVGPGQVLRDMLASGRIPTVELTEIYRQSSGSSIIELAHQMKAGKLPDNIEAKTSDRSFIRAGADQIPMVVEK
VVKSALSKGHTIKDIQVLAPMYKGPAGIDALNQMIQQMVNPNDDGSRKELVFGDITYRINDKVLQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
RDFLILCGDPGVFRYGVERTDDSSRLTTLADRLGTAAVPDQGAASDALEASAEKPEPEAEAAGPKSLTQQNAHRIHPMIG
MEGITPRDFQEA

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=631256 LL948_RS07640 WP_404337490.1 1488070..1490508(+) (recD2) [Planococcus rifietoensis strain QJJ-917]
ATGTCCGGACAGATTGATTTATTCCAAAAAGAAAGTGAATTTGTGCTGGGGCGTCCGGTCGTCTCGATTTTTCACAATCC
CCAAAACCTCTTCTCCATCATCAAAGTGAAAATCCAGCAAACCAACACCCCGTACACGGAAAAGGAAATCATCGTCTCCG
GTTATTTCCCGAAGCTGTCGCTTGAAGAACAATACAAGTTCACCGGCAGCGTCAAGAACCACCCGAAATACGGCGTGCAG
TTCCAGGCTGAAACCTTCAAGAAAGAAGTGCCGGAAACAGAACAAGGCGTCGTCCATTATTTATCGAGCGATTTGTTCAA
CGGCATCGGGCGTAAAACCGCCGAGACGATCGTCAAGAAACTCGGCAGCGATGCCATCAAGAAAATCCTGGAAGACCCCG
ATGCGCTGGATGGCGTCCCGCGCCTGTCGGATGATAAAAAAGACACGATCCGCTCGACATTGCAGATGAACTTAGGCCTT
GAACGCGTGATGATCCAATTGAATGATTGGGGATTCGGACCGCAAATCGGCATGAGGATCTACCAGGCTTACCGCGAGGA
AACAATTGATATCCTGACGAAAAATCCATTCCAGCTCATCGAGGAAATCGAAGGCATCGGGTTCCACCGGGCGGACGAGC
TCGGGTCGAAACTCGGCATCACCGGCAGCCATCCTGACCGCATCAAAGCGGCAATCCTTCATGTATTGAACCAAGCATCG
TTGTCAGAAGGGCATGTCTTCGTCGACGCGAAGAATTTGATCCCGCTCGTCAAGCAAATGCTCGAAGCGAGCCAACGCGA
AGACATCCCGGTCGACTCGATATCTAAGGCGGCGATTGAATTGAACGAAGAAGGCAAAGTGGCGGGGGAAGAAACCCGCC
TTTATTTGCCGTCGCTGTATTATTCGGAAGTCGGCATCGCAACGAAGCTCGAAACATTGATTGCCGAGCAAGAGACGCGC
GATGGCTTCCCGTCATCCGAAATCCGCAAAGCGCTCGGCGAAGCCGAAGAGCGGCTCGGCGTGAATTATGCAGAGACGCA
AATCGACGCCATCGAGAAAAGCTTGAATTCGAGCGTCATGATCCTCACCGGGGGACCCGGAACCGGCAAGACGACAGTCG
TCCGGGGATTGGTCGAAGTATATGCAGAGCTGCACGGCTTGTCCCTCGACCCGAAAGACTACGCCAAGAAAAAAGAACCG
TTCCCGATCATTTTGGCAGCTCCTACAGGACGCGCAGCAAAACGCCTCAGCGAGTCGACTGATTTGCCGGCGATGACGAT
TCACCGGCTGCTCGGCTTTAACGGGCAGGAACGGGAAGAGGAAACTGAAAAAGACATCGAAGGCAAATTGATCATCATCG
ATGAAATGTCGATGGTCGATACTTGGCTTGCCCATCAATTATTAAAAGCGGTCCCTGTCGACGCCCAGCTGATCTTTGTC
GGCGACCAGGACCAATTGCCGCCGGTCGGCCCCGGGCAAGTGCTGCGGGACATGCTGGCATCCGGCCGCATTCCGACGGT
TGAGCTGACGGAAATCTACCGCCAAAGCTCAGGCTCATCGATCATCGAACTCGCACACCAGATGAAAGCCGGGAAGCTTC
CCGACAATATTGAGGCGAAGACGTCCGACCGTTCGTTCATCCGAGCAGGCGCGGACCAGATTCCGATGGTGGTCGAAAAA
GTAGTCAAGAGCGCATTGTCAAAAGGCCATACGATCAAAGACATCCAAGTGCTTGCGCCGATGTATAAAGGGCCAGCCGG
GATCGATGCGCTTAACCAGATGATCCAGCAGATGGTCAACCCGAACGATGACGGTTCTCGAAAAGAGCTGGTGTTCGGCG
ATATTACTTACCGCATCAATGACAAAGTGCTGCAACTGGTCAATCAGCCTGAGAGCAATGTTTTCAACGGCGATATGGGC
GAAGTGGTCGCCATCATGAAAGCGAAAGAGACGGTGGAAAAGCAGGACCTGCTCGTCGTGTCGTTTGATGGCATCGAAGT
GACCTACCAGCGCAGCGATTTGAACCAGTTGACGCTCGCCTATTGCTGTTCGATCCATAAAGCGCAAGGCTCGGAATTTC
CGACGGTCATCATGCCGGTCGTCCGCGGCTATATGAAAATGCTGCGGCGCAACCTGCTCTACACAGGCATCACGAGAAGC
CGGGATTTTCTCATCCTGTGCGGCGACCCGGGCGTGTTCCGCTACGGTGTCGAGCGCACCGATGATTCGAGCCGCCTGAC
GACATTGGCGGACCGATTGGGCACGGCGGCTGTTCCAGATCAAGGCGCAGCCTCGGATGCGCTAGAAGCATCAGCCGAAA
AACCGGAGCCAGAAGCAGAAGCTGCAGGGCCGAAAAGCCTGACGCAGCAAAACGCCCACCGCATCCATCCGATGATCGGC
ATGGAAGGCATCACGCCGCGCGACTTCCAAGAAGCGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.293

98.892

0.547