Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPH64_RS06215 Genome accession   NZ_CP087688
Coordinates   1540630..1541667 (+) Length   345 a.a.
NCBI ID   WP_038271801.1    Uniprot ID   Z9JGW8
Organism   Xylella taiwanensis strain PLS413     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1535630..1546667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH64_RS06200 (LPH64_06200) - 1536886..1537914 (+) 1029 WP_201745795.1 nitronate monooxygenase -
  LPH64_RS06205 (LPH64_06205) - 1538821..1538976 (-) 156 WP_160165196.1 hypothetical protein -
  LPH64_RS06210 (LPH64_06210) lexA 1539814..1540449 (+) 636 WP_038271803.1 transcriptional repressor LexA -
  LPH64_RS06215 (LPH64_06215) recA 1540630..1541667 (+) 1038 WP_038271801.1 recombinase RecA Machinery gene
  LPH64_RS06220 (LPH64_06220) alaS 1542383..1545034 (+) 2652 WP_038271800.1 alanine--tRNA ligase -
  LPH64_RS06225 (LPH64_06225) csrA 1545174..1545389 (+) 216 WP_038271798.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37221.89 Da        Isoelectric Point: 5.2056

>NTDB_id=630904 LPH64_RS06215 WP_038271801.1 1540630..1541667(+) (recA) [Xylella taiwanensis strain PLS413]
MDENKKRALSVALSQIEKQFGKGSVMRMGDRVIEAVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDVMVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGGERIGQGKDNARGYLRENPQIAAKL
EAELREKFQPAELSREEGDEEALEG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=630904 LPH64_RS06215 WP_038271801.1 1540630..1541667(+) (recA) [Xylella taiwanensis strain PLS413]
ATGGACGAGAACAAGAAACGTGCCCTTTCTGTCGCTTTAAGCCAGATTGAAAAACAGTTCGGCAAGGGATCTGTGATGCG
TATGGGGGATCGGGTGATCGAAGCCGTAGAGGCAATCCCGACGGGTTCACTCATGTTGGATTTGGCCCTGGGTATCGGTG
GTCTGCCAAAGGGACGTGTCGTGGAAATCTATGGGCCAGAATCTTCAGGGAAGACCACATTGACTTTGCAGGCTATCGCT
CAGTGTCAGAAGAAGGGCGGGACTGCGGCTTTCATTGATGCTGAGCACGCACTGGACCCGATTTATGCGGCCAAGTTAGG
TGTGAATGTTGATGATTTGTTGTTGTCTCAGCCGGATACTGGTGAGCAGGCATTGGAAATTGCTGACATGCTGGTGCGCT
CGGGTTCGATCGATGTCATGGTCATCGACTCCGTTGCGGCACTGACGCCAAAGGCAGAGATTGAAGGCGAGATGGGAGAC
CAGTTGCCCGGTCTTCAGGCTCGCTTGATGAGCCAGGCACTGCGCAAATTGACAGGCAATATTAAACGTTCCAATACGCT
GGTGATTTTCATCAACCAGTTGCGTATGAAGATTGGAGTCATGATGCCGGGTCAAAGTCCTGAAACCACTACGGGTGGTA
ATGCGCTGAAGTTCTATGCTTCTGTGCGCTTGGATATTCGCCGCATTGGTGCGATCAAGAAGGGCGACGAAATTATCGGT
AATCAAACCAAAATCAAGGTCGTCAAGAACAAATTGGCGCCTCCCTTCAAGCAAGTCGTCACTGAGATTTTGTATGGTGA
GGGCATTAGTCGTGAGGGGGAGTTGATCGATATGGGTGTGGATGCCAAGCTGGTAGAGAAAGCGGGCGCGTGGTACAGCT
ACGGTGGTGAGCGTATTGGCCAAGGGAAAGATAATGCTCGCGGATATTTACGTGAAAATCCGCAGATTGCGGCCAAGCTT
GAAGCTGAGCTGCGCGAGAAATTTCAGCCGGCTGAACTTTCTCGAGAAGAAGGTGACGAAGAGGCGCTGGAAGGTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Z9JGW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

74.085

95.072

0.704
  recA Acinetobacter baumannii D1279779

73.476

95.072

0.699
  recA Pseudomonas stutzeri DSM 10701

72.866

95.072

0.693
  recA Ralstonia pseudosolanacearum GMI1000

76.038

90.725

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.779

94.493

0.678
  recA Vibrio cholerae strain A1552

71.779

94.493

0.678
  recA Neisseria gonorrhoeae MS11

66.474

100

0.667
  recA Neisseria gonorrhoeae MS11

66.474

100

0.667
  recA Neisseria gonorrhoeae strain FA1090

66.474

100

0.667
  recA Glaesserella parasuis strain SC1401

69.659

93.623

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

96.812

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.375

92.754

0.597
  recA Helicobacter pylori strain NCTC11637

62.048

96.232

0.597
  recA Helicobacter pylori 26695

61.446

96.232

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

94.203

0.586
  recA Streptococcus pneumoniae Rx1

61.28

95.072

0.583
  recA Streptococcus pneumoniae D39

61.28

95.072

0.583
  recA Streptococcus pneumoniae R6

61.28

95.072

0.583
  recA Streptococcus pneumoniae TIGR4

61.28

95.072

0.583
  recA Streptococcus pyogenes NZ131

60.303

95.652

0.577
  recA Streptococcus mutans UA159

60.303

95.652

0.577
  recA Streptococcus mitis NCTC 12261

60.366

95.072

0.574
  recA Streptococcus mitis SK321

60.366

95.072

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

59.104

97.101

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.697

95.652

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.462

94.203

0.551