Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   NDL71_RS06305 Genome accession   NZ_CP104546
Coordinates   1173088..1174047 (+) Length   319 a.a.
NCBI ID   WP_260247272.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9035     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1168088..1179047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL71_RS06280 (NDL71_02650) - 1168637..1169146 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDL71_RS06285 (NDL71_02655) - 1169378..1169959 (-) 582 WP_003690895.1 superoxide dismutase -
  NDL71_RS06290 (NDL71_02660) dnaB 1170123..1171526 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDL71_RS12045 - 1171520..1171632 (-) 113 Protein_1209 IS5/IS1182 family transposase -
  NDL71_RS06295 (NDL71_02665) pilH 1171783..1172445 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL71_RS06300 (NDL71_02670) pilV/pilI 1172477..1173091 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  NDL71_RS06305 (NDL71_02675) pilJ 1173088..1174047 (+) 960 WP_260247272.1 PilW family protein Machinery gene
  NDL71_RS06310 (NDL71_02680) pilK 1174026..1174637 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDL71_RS06315 (NDL71_02685) pilL 1174639..1175112 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDL71_RS06320 (NDL71_02690) - 1175182..1175490 (-) 309 WP_003706588.1 AzlD family protein -
  NDL71_RS06325 (NDL71_02695) - 1175487..1176198 (-) 712 Protein_1216 AzlC family ABC transporter permease -
  NDL71_RS06330 (NDL71_02700) dut 1176364..1176816 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDL71_RS06335 (NDL71_02705) dapC 1176888..1178075 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  NDL71_RS06340 (NDL71_02710) yaaA 1178231..1179010 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35235.20 Da        Isoelectric Point: 9.5285

>NTDB_id=630754 NDL71_RS06305 WP_260247272.1 1173088..1174047(+) (pilJ) [Neisseria gonorrhoeae strain 9035]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPGKQILNLEDVKKELKIVGQGKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=630754 NDL71_RS06305 WP_260247272.1 1173088..1174047(+) (pilJ) [Neisseria gonorrhoeae strain 9035]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGT
GGGTCAGGGTAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

86.52

100

0.865