Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LOZ89_RS16820 Genome accession   NZ_CP087594
Coordinates   3503502..3504062 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SHOU-Ab01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498502..3509062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ89_RS16810 (LOZ89_16810) pilX 3501685..3502503 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LOZ89_RS16815 (LOZ89_16815) pilW 3502500..3503501 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ89_RS16820 (LOZ89_16820) pilV 3503502..3504062 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ89_RS16825 (LOZ89_16825) fimU 3504056..3504529 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ89_RS16830 (LOZ89_16830) ispH 3504699..3505649 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ89_RS16835 (LOZ89_16835) gmk 3505772..3506401 (+) 630 WP_000015937.1 guanylate kinase -
  LOZ89_RS16840 (LOZ89_16840) rpoZ 3506474..3506752 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ89_RS16845 (LOZ89_16845) - 3506791..3506921 (+) 131 Protein_3285 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=630325 LOZ89_RS16820 WP_002194578.1 3503502..3504062(-) (pilV) [Acinetobacter baumannii strain SHOU-Ab01]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=630325 LOZ89_RS16820 WP_002194578.1 3503502..3504062(-) (pilV) [Acinetobacter baumannii strain SHOU-Ab01]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414