NTDB

Overview

Name	comGB	Type	Machinery gene
Locus tag	LO764_RS07980	Genome accession	NZ_CP087593
Coordinates	1620225..1621295 (-)	Length	356 a.a.
NCBI ID	WP_000775708.1	Uniprot ID	-
Organism	Staphylococcus aureus strain Newman NM-CQ
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1615225..1626295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LO764_RS07940 (LO764_07940)	gcvPA	1615402..1616748 (-)	1347	WP_000019687.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
LO764_RS07945 (LO764_07945)	gcvT	1616768..1617859 (-)	1092	WP_000093349.1	glycine cleavage system aminomethyltransferase GcvT	-
LO764_RS07950 (LO764_07950)	-	1618018..1618542 (-)	525	WP_001015117.1	shikimate kinase	-
LO764_RS07955 (LO764_07955)	-	1618532..1618678 (-)	147	WP_001789879.1	hypothetical protein	-
LO764_RS07960 (LO764_07960)	comGF	1618775..1619272 (-)	498	WP_001789864.1	competence type IV pilus minor pilin ComGF	Machinery gene
LO764_RS07965 (LO764_07965)	comGE	1619190..1619489 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
LO764_RS07970 (LO764_07970)	comGD	1619476..1619922 (-)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene
LO764_RS07975 (LO764_07975)	comGC	1619900..1620211 (-)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
LO764_RS07980 (LO764_07980)	comGB	1620225..1621295 (-)	1071	WP_000775708.1	competence type IV pilus assembly protein ComGB	Machinery gene
LO764_RS07985 (LO764_07985)	comGA	1621267..1622241 (-)	975	WP_000697228.1	competence type IV pilus ATPase ComGA	Machinery gene
LO764_RS07990 (LO764_07990)	-	1622293..1622916 (-)	624	WP_001223008.1	MBL fold metallo-hydrolase	-
LO764_RS07995 (LO764_07995)	-	1622913..1623242 (-)	330	WP_001018871.1	MTH1187 family thiamine-binding protein	-
LO764_RS08000 (LO764_08000)	-	1623242..1624228 (-)	987	WP_000161314.1	ROK family glucokinase	-
LO764_RS08005 (LO764_08005)	-	1624225..1624428 (-)	204	WP_000087561.1	YqgQ family protein	-
LO764_RS08010 (LO764_08010)	-	1624409..1625872 (-)	1464	WP_001017867.1	rhomboid family protein	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 41364.77 Da Isoelectric Point: 10.0092

                                >NTDB_id=630268 LO764_RS07980 WP_000775708.1 1620225..1621295(-) (comGB) [Staphylococcus aureus strain Newman NM-CQ]

MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG

YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS

SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ

SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK

QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=630268 LO764_RS07980 WP_000775708.1 1620225..1621295(-) (comGB) [Staphylococcus aureus strain Newman NM-CQ]

GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT

TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA

AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT

TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA

TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA

TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT

TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT

GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT

CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA

TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA

AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG

AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA

CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC

AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGB	Staphylococcus aureus MW2	99.719	100	0.997
comGB	Staphylococcus aureus N315	99.719	100	0.997

Detailed information NTG0630268