Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IUZ65_RS00660 Genome accession   NZ_CP087590
Coordinates   143387..144088 (-) Length   233 a.a.
NCBI ID   WP_195704862.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138387..149088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS00630 (IUZ65_000630) gspL 138605..139816 (+) 1212 WP_195704857.1 type II secretion system protein GspL -
  IUZ65_RS00635 (IUZ65_000635) - 139816..140310 (+) 495 WP_195704858.1 type II secretion system protein M -
  IUZ65_RS00640 (IUZ65_000640) - 140312..141073 (+) 762 WP_195704859.1 type II secretion system protein N -
  IUZ65_RS00645 (IUZ65_000645) nudE 141163..141735 (+) 573 WP_195704860.1 ADP compounds hydrolase NudE -
  IUZ65_RS00650 (IUZ65_000650) cysQ 141744..142574 (+) 831 WP_195704861.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IUZ65_RS00655 (IUZ65_000655) nfuA 142687..143298 (-) 612 WP_195705156.1 Fe-S biogenesis protein NfuA -
  IUZ65_RS00660 (IUZ65_000660) comF 143387..144088 (-) 702 WP_195704862.1 ComF family protein Machinery gene
  IUZ65_RS00665 (IUZ65_000665) bioH 144172..144966 (+) 795 WP_195704863.1 pimeloyl-ACP methyl ester esterase BioH -
  IUZ65_RS00670 (IUZ65_000670) - 145084..145554 (+) 471 WP_195704864.1 ATP-dependent Lon protease -
  IUZ65_RS00675 (IUZ65_000675) - 145630..147969 (-) 2340 WP_195704865.1 Tex family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26703.22 Da        Isoelectric Point: 9.4245

>NTDB_id=630213 IUZ65_RS00660 WP_195704862.1 143387..144088(-) (comF) [Vibrio sp. VB16]
MWKKEFRRIITQYSNPICHLCGLSKGSKFGDLIWCQSCLLLFIAKPRCCQCGLETLIPVAKCGACLSEPPLWDRLFCVGD
YKAPLSNYIHNLKYSGQLQYAYDLTYLLSKRIDNPAPLIVSMPLHWRRFLHRGYNQSDVLGRYLTTHLQGRSTFDQTLFK
RVKSTPSQQGLDKQQRTKNLTHAFTLNWLPNQTHIAIIDDVVTTGSSVRQLCKLLLDVGVKKIDIYCICRTGT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=630213 IUZ65_RS00660 WP_195704862.1 143387..144088(-) (comF) [Vibrio sp. VB16]
ATGTGGAAAAAAGAATTCCGTCGTATTATTACCCAATATTCTAACCCAATTTGCCATTTATGTGGTCTTAGCAAGGGCAG
TAAATTTGGCGATCTCATTTGGTGTCAGAGTTGTTTATTGCTTTTTATAGCCAAACCCCGTTGCTGCCAATGCGGATTAG
AAACCCTAATACCCGTTGCCAAGTGTGGTGCTTGTTTATCCGAACCACCACTCTGGGACCGGCTTTTTTGTGTCGGTGAT
TATAAAGCGCCATTATCTAACTATATTCATAACTTAAAGTATTCAGGTCAACTGCAATACGCTTACGATCTGACCTATTT
GTTGTCAAAAAGGATAGATAACCCTGCTCCACTCATCGTGAGCATGCCACTCCATTGGCGACGTTTTCTACATCGAGGTT
ACAACCAGAGTGATGTTCTCGGGCGCTACCTAACCACTCATTTACAAGGAAGGAGCACCTTCGACCAAACGCTCTTTAAA
AGGGTTAAATCTACCCCCAGCCAACAGGGATTAGATAAGCAACAAAGGACGAAAAACCTGACCCATGCATTTACCCTCAA
TTGGTTACCTAATCAAACACATATCGCAATTATTGACGACGTAGTTACCACAGGAAGTTCCGTCCGACAATTATGCAAAT
TACTCCTTGATGTTGGAGTGAAAAAAATTGATATTTATTGCATCTGCAGAACAGGAACATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.632

97.854

0.515
  comF Vibrio campbellii strain DS40M4

49.01

86.695

0.425