Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LL667_RS03295 Genome accession   NZ_CP087583
Coordinates   696895..697545 (+) Length   216 a.a.
NCBI ID   WP_218249905.1    Uniprot ID   -
Organism   Kaistella faecalis strain F4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 691895..702545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL667_RS03280 (LL667_03280) aceA 692301..693590 (-) 1290 WP_218250483.1 isocitrate lyase -
  LL667_RS03285 (LL667_03285) aceB 693620..695197 (-) 1578 WP_218249903.1 malate synthase A -
  LL667_RS03290 (LL667_03290) - 695376..696845 (+) 1470 WP_218249904.1 helix-turn-helix transcriptional regulator -
  LL667_RS03295 (LL667_03295) comF 696895..697545 (+) 651 WP_218249905.1 phosphoribosyltransferase family protein Machinery gene
  LL667_RS03300 (LL667_03300) upp 697566..698216 (-) 651 WP_218249906.1 uracil phosphoribosyltransferase -
  LL667_RS03305 (LL667_03305) der 698298..699608 (-) 1311 WP_218249907.1 ribosome biogenesis GTPase Der -
  LL667_RS03310 (LL667_03310) murA 699900..701207 (-) 1308 WP_218249908.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LL667_RS03315 (LL667_03315) - 701211..701864 (-) 654 WP_218249909.1 DUF4290 domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24931.78 Da        Isoelectric Point: 7.0069

>NTDB_id=630163 LL667_RS03295 WP_218249905.1 696895..697545(+) (comF) [Kaistella faecalis strain F4]
MILNLLFPNRCLECNQIISADELVCGICMDQILFTHHDFSESNLLKERCSLLFPVENAFALMQFEEESLSRKIVHQLKYG
SREKTGKILAEWTGERIHFDDNKPDLMVSVPLHPKKLKERGYNQLHLFTKTLSETLQIPFDHHLIKRNFYQKAQAKKDKS
HRTETENLFSVTKEISDKHVLLIDDVFTTGNTMSSVAWEILKAGNNKVSVLVMAVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=630163 LL667_RS03295 WP_218249905.1 696895..697545(+) (comF) [Kaistella faecalis strain F4]
GTGATTCTAAATTTACTGTTTCCGAACCGCTGCCTCGAGTGCAACCAAATTATCAGTGCTGATGAACTCGTATGCGGAAT
CTGCATGGACCAGATTCTGTTTACCCATCACGATTTTTCTGAAAGCAACCTGCTGAAAGAACGTTGTTCACTTTTATTTC
CCGTTGAAAATGCATTTGCCCTGATGCAGTTTGAAGAAGAAAGTTTAAGCCGCAAAATCGTTCATCAACTTAAATACGGA
AGCCGGGAAAAAACAGGAAAAATACTGGCAGAATGGACAGGTGAAAGAATTCATTTTGATGACAACAAACCCGATCTCAT
GGTTTCTGTTCCGCTACATCCGAAAAAACTAAAGGAAAGAGGCTATAACCAGCTTCATCTTTTTACCAAAACTTTATCGG
AAACACTCCAAATCCCCTTCGATCATCATTTGATCAAAAGAAATTTTTACCAAAAAGCCCAGGCAAAGAAAGACAAATCG
CACCGAACTGAAACTGAGAATCTTTTTTCAGTGACGAAGGAAATTTCAGATAAGCATGTCTTGCTGATTGATGATGTTTT
CACTACCGGAAATACCATGAGTTCCGTTGCGTGGGAAATCCTGAAAGCCGGTAACAATAAAGTTTCCGTTCTCGTAATGG
CGGTTGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(128-205)

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.241

100

0.532