Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB20_RS12090 Genome accession   NZ_CP087500
Coordinates   2412391..2412996 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01320SL0033     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2407391..2417996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB20_RS12075 (LPB20_12040) helD 2407608..2409662 (-) 2055 WP_000420505.1 DNA helicase IV -
  LPB20_RS12080 (LPB20_12045) - 2409786..2410232 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB20_RS12085 (LPB20_12050) yccS 2410251..2412404 (+) 2154 WP_000950876.1 YccS family putative transporter -
  LPB20_RS12090 (LPB20_12055) sxy/tfoX 2412391..2412996 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB20_RS12095 (LPB20_12060) sulA 2413213..2413722 (+) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  LPB20_RS12100 (LPB20_12065) ompA 2414079..2415131 (+) 1053 WP_001674965.1 porin OmpA -
  LPB20_RS12105 (LPB20_12070) matP 2415203..2415655 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB20_RS12110 (LPB20_12075) - 2415841..2417601 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629583 LPB20_RS12090 WP_001202375.1 2412391..2412996(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0033]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629583 LPB20_RS12090 WP_001202375.1 2412391..2412996(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0033]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751