Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   N596_RS01095 Genome accession   NC_022584
Coordinates   205302..206114 (+) Length   270 a.a.
NCBI ID   WP_196805875.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 200302..211114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS01065 (N596_01105) - 200383..201270 (+) 888 WP_023026626.1 F0F1 ATP synthase subunit gamma -
  N596_RS01070 (N596_01110) atpD 201359..202765 (+) 1407 WP_006596622.1 F0F1 ATP synthase subunit beta -
  N596_RS01075 (N596_01115) - 202779..203198 (+) 420 WP_023026627.1 F0F1 ATP synthase subunit epsilon -
  N596_RS01080 (N596_01120) - 203439..203669 (+) 231 WP_023022750.1 DUF1146 family protein -
  N596_RS01085 (N596_01125) murA 203736..205019 (+) 1284 WP_023026629.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  N596_RS01090 (N596_01130) - 205009..205197 (+) 189 WP_023022752.1 DNA-directed RNA polymerase subunit beta -
  N596_RS01095 (N596_01135) endA 205302..206114 (+) 813 WP_196805875.1 DNA/RNA non-specific endonuclease Machinery gene
  N596_RS01100 (N596_01140) - 206281..207006 (+) 726 WP_023022754.1 matrixin family metalloprotease -
  N596_RS01105 (N596_01145) - 207003..207374 (+) 372 WP_023026632.1 hypothetical protein -
  N596_RS01110 (N596_01150) - 207457..209361 (+) 1905 WP_023026633.1 ABC-F family ATP-binding cassette domain-containing protein -
  N596_RS01115 (N596_01155) - 209392..209745 (+) 354 WP_023026634.1 hypothetical protein -
  N596_RS01120 (N596_01160) - 209750..210622 (+) 873 WP_023026635.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 29549.00 Da        Isoelectric Point: 9.2980

>NTDB_id=62944 N596_RS01095 WP_196805875.1 205302..206114(+) (endA) [Streptococcus ilei]
MKKSGQTLLGLVVAAALSIGGYYFSQPQPIASHSQVQTVVTSSQQATPSKELAESVLTDGVRTKLGKNVQWNEAGAFIIN
QNKTNLDADVASLPYADTKTKTVKGREIPTVANALMTKATRQYQKREQTDVDWTPAGWHQVTNLAGEYDHAVDRGHLLGY
ALIGKLDGFDASTSNPKNIAVQTAWANQARDSFSTGQNYYETIVRKALDNNKRVRYRVTLHYASDDDLVPVGSQIEAKSS
DGSLEFNVFVPNVQSGISLDYRTGKVTVHR

Nucleotide


Download         Length: 813 bp        

>NTDB_id=62944 N596_RS01095 WP_196805875.1 205302..206114(+) (endA) [Streptococcus ilei]
ATGAAAAAATCGGGACAAACCTTACTAGGCTTGGTGGTGGCTGCAGCTCTCTCGATCGGCGGGTATTATTTTAGTCAACC
CCAGCCAATCGCTAGTCACTCTCAAGTTCAAACGGTTGTCACTTCGAGTCAACAAGCAACACCGAGTAAGGAACTAGCTG
AGAGTGTTCTGACGGATGGTGTTCGTACAAAACTAGGAAAGAACGTTCAATGGAACGAAGCGGGCGCTTTCATTATTAAC
CAGAACAAAACCAATCTGGATGCAGATGTTGCTAGTCTCCCTTATGCAGATACGAAGACAAAGACTGTAAAAGGACGAGA
AATTCCCACAGTTGCCAACGCTTTGATGACCAAGGCGACTCGTCAATACCAAAAGAGAGAGCAGACAGATGTAGATTGGA
CGCCAGCTGGCTGGCACCAAGTAACCAATTTAGCTGGGGAATACGACCATGCGGTTGATCGGGGACACCTTCTCGGCTAT
GCCTTGATAGGTAAGCTTGATGGTTTTGATGCCTCAACGAGCAATCCAAAAAATATAGCGGTTCAAACAGCTTGGGCGAA
TCAAGCTCGTGATAGTTTTTCGACAGGACAAAATTATTATGAGACCATTGTTCGGAAGGCCTTAGACAATAATAAGCGGG
TTCGTTATCGAGTGACTCTCCACTATGCATCGGATGATGATTTGGTACCAGTCGGCAGTCAAATTGAAGCAAAATCTAGT
GATGGTAGTCTAGAGTTTAACGTCTTTGTTCCAAATGTTCAGAGTGGGATTAGTTTGGATTATCGTACGGGAAAAGTAAC
AGTGCATCGTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.279

100

0.678
  endA Streptococcus pneumoniae D39

67.279

100

0.678
  endA Streptococcus pneumoniae R6

67.279

100

0.678
  endA Streptococcus pneumoniae TIGR4

67.279

100

0.678

Multiple sequence alignment