Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO000_RS08895 Genome accession   NZ_CP087354
Coordinates   1822705..1823406 (+) Length   233 a.a.
NCBI ID   WP_258577701.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB002     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1817705..1828406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS08860 kdsB 1818228..1818989 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO000_RS08865 - 1819001..1819981 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  LO000_RS08870 - 1819993..1820334 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LO000_RS08875 - 1820352..1821125 (+) 774 WP_000497298.1 TatD family hydrolase -
  LO000_RS08880 - 1821163..1821771 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO000_RS08885 - 1821781..1822335 (+) 555 WP_000841373.1 type II secretion system protein -
  LO000_RS08890 xcpV 1822325..1822705 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO000_RS08895 xcpW 1822705..1823406 (+) 702 WP_258577701.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO000_RS08900 gspK 1823406..1824365 (+) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  LO000_RS08905 - 1824596..1825192 (+) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  LO000_RS08910 ung 1825243..1825956 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  LO000_RS08915 - 1825953..1827077 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO000_RS08920 tadA 1827084..1827587 (+) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -
  LO000_RS08925 - 1827657..1828100 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26625.51 Da        Isoelectric Point: 9.0378

>NTDB_id=629115 LO000_RS08895 WP_258577701.1 1822705..1823406(+) (xcpW) [Acinetobacter baumannii strain DB002]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLNVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=629115 LO000_RS08895 WP_258577701.1 1822705..1823406(+) (xcpW) [Acinetobacter baumannii strain DB002]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAACGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991