Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LO006_RS01630 Genome accession   NZ_CP087348
Coordinates   347413..347838 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain DB006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342413..352838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS01620 pilY1 343067..346921 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  LO006_RS01625 pilY2 346934..347416 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  LO006_RS01630 pilE 347413..347838 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LO006_RS01635 rpsP 347985..348236 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO006_RS01640 rimM 348256..348804 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO006_RS01645 trmD 348850..349590 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO006_RS01650 rplS 349799..350167 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO006_RS01655 - 350220..351161 (-) 942 WP_085916958.1 triacylglycerol lipase -
  LO006_RS01660 - 351276..352310 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=629011 LO006_RS01630 WP_000788342.1 347413..347838(+) (pilE) [Acinetobacter baumannii strain DB006]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=629011 LO006_RS01630 WP_000788342.1 347413..347838(+) (pilE) [Acinetobacter baumannii strain DB006]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518