Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO006_RS01480 Genome accession   NZ_CP087348
Coordinates   313535..314176 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain DB006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308535..319176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS01460 - 308582..308914 (+) 333 WP_000169594.1 hypothetical protein -
  LO006_RS01465 - 308917..309741 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  LO006_RS01470 ponA 309759..312314 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LO006_RS01475 pilM 312477..313535 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO006_RS01480 pilN 313535..314176 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO006_RS01485 pilO 314173..314913 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO006_RS01490 pilP 314924..315451 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO006_RS01495 pilQ 315519..317684 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  LO006_RS01500 aroK 317696..318265 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=629001 LO006_RS01480 WP_000201227.1 313535..314176(+) (pilN) [Acinetobacter baumannii strain DB006]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=629001 LO006_RS01480 WP_000201227.1 313535..314176(+) (pilN) [Acinetobacter baumannii strain DB006]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709