Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LOZ99_RS18685 Genome accession   NZ_CP087344
Coordinates   3818465..3819106 (-) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain DB007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3813465..3824106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ99_RS18665 aroK 3814381..3814950 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LOZ99_RS18670 pilQ 3814962..3817127 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  LOZ99_RS18675 pilP 3817190..3817717 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  LOZ99_RS18680 pilO 3817728..3818468 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LOZ99_RS18685 pilN 3818465..3819106 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  LOZ99_RS18690 pilM 3819106..3820164 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LOZ99_RS18695 ponA 3820326..3822881 (+) 2556 WP_072292235.1 penicillin-binding protein PBP1a -
  LOZ99_RS18700 - 3822899..3823723 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  LOZ99_RS18705 - 3823726..3824058 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=628996 LOZ99_RS18685 WP_000201229.1 3818465..3819106(-) (pilN) [Acinetobacter baumannii strain DB007]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628996 LOZ99_RS18685 WP_000201229.1 3818465..3819106(-) (pilN) [Acinetobacter baumannii strain DB007]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714