Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO010_RS01770 Genome accession   NZ_CP087335
Coordinates   379167..379640 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain DB053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374167..384640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS01745 - 374630..376735 (-) 2106 WP_258580362.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO010_RS01750 - 376775..376905 (-) 131 Protein_336 hypothetical protein -
  LO010_RS01755 rpoZ 376944..377222 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO010_RS01760 gmk 377295..377924 (-) 630 WP_000015937.1 guanylate kinase -
  LO010_RS01765 ispH 378047..378997 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO010_RS01770 fimU 379167..379640 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO010_RS01775 pilV 379634..380194 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO010_RS01780 pilW 380195..381196 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  LO010_RS01785 - 381193..381495 (+) 303 Protein_343 PilX N-terminal domain-containing pilus assembly protein -
  LO010_RS01790 - 381567..382657 (+) 1091 WP_141738495.1 IS4-like element ISAba1 family transposase -
  LO010_RS01795 - 382676..383200 (+) 525 Protein_345 pilus assembly protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628866 LO010_RS01770 WP_001214065.1 379167..379640(+) (fimU) [Acinetobacter baumannii strain DB053]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628866 LO010_RS01770 WP_001214065.1 379167..379640(+) (fimU) [Acinetobacter baumannii strain DB053]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1