Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LOZ98_RS01695 Genome accession   NZ_CP087328
Coordinates   354078..354503 (+) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349078..359503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS01685 pilY1 349732..353586 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  LOZ98_RS01690 pilY2 353599..354081 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  LOZ98_RS01695 pilE 354078..354503 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  LOZ98_RS01700 rpsP 354650..354901 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LOZ98_RS01705 rimM 354921..355469 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LOZ98_RS01710 trmD 355515..356255 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LOZ98_RS01715 rplS 356463..356831 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LOZ98_RS01720 - 356884..357825 (-) 942 WP_086321537.1 triacylglycerol lipase -
  LOZ98_RS01725 - 357940..358971 (-) 1032 WP_001189457.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=628777 LOZ98_RS01695 WP_000788337.1 354078..354503(+) (pilE) [Acinetobacter baumannii strain OC074]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=628777 LOZ98_RS01695 WP_000788337.1 354078..354503(+) (pilE) [Acinetobacter baumannii strain OC074]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496