Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO002_RS17620 Genome accession   NZ_CP087321
Coordinates   3641823..3642464 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain OC043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636823..3647464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO002_RS17600 aroK 3637734..3638303 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO002_RS17605 pilQ 3638315..3640480 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  LO002_RS17610 pilP 3640548..3641075 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO002_RS17615 pilO 3641086..3641826 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO002_RS17620 pilN 3641823..3642464 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO002_RS17625 pilM 3642464..3643522 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO002_RS17630 ponA 3643685..3646240 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LO002_RS17635 - 3646258..3647082 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  LO002_RS17640 - 3647085..3647417 (-) 333 WP_000169594.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=628714 LO002_RS17620 WP_000201227.1 3641823..3642464(-) (pilN) [Acinetobacter baumannii strain OC043]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628714 LO002_RS17620 WP_000201227.1 3641823..3642464(-) (pilN) [Acinetobacter baumannii strain OC043]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709