Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO012_RS02640 Genome accession   NZ_CP087317
Coordinates   525439..526299 (-) Length   286 a.a.
NCBI ID   WP_001152277.1    Uniprot ID   A0A009HWK1
Organism   Acinetobacter baumannii strain OC064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520439..531299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO012_RS02615 - 521330..522640 (+) 1311 WP_000753277.1 tetratricopeptide repeat protein -
  LO012_RS02620 - 522717..523043 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO012_RS02625 rlmB 523145..523894 (+) 750 WP_001118150.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO012_RS02630 - 523930..524844 (+) 915 WP_000075011.1 DMT family transporter -
  LO012_RS02635 coaE 524841..525437 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  LO012_RS02640 pilD 525439..526299 (-) 861 WP_001152277.1 A24 family peptidase Machinery gene
  LO012_RS02645 pilC 526299..527525 (-) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  LO012_RS02650 pilB 527555..529267 (-) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO012_RS02655 tpiA 529558..530352 (+) 795 WP_000016931.1 triose-phosphate isomerase -
  LO012_RS02660 secG 530365..530694 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32038.43 Da        Isoelectric Point: 7.1041

>NTDB_id=628641 LO012_RS02640 WP_001152277.1 525439..526299(-) (pilD) [Acinetobacter baumannii strain OC064]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628641 LO012_RS02640 WP_001152277.1 525439..526299(-) (pilD) [Acinetobacter baumannii strain OC064]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441